PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G227900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 348aa    MW: 39281.3 Da    PI: 5.6513
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G227900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.61.8e-25195248156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k rl Wt++LH++F+ av++LG  ekA+Pk+ile+mkvk Lt+e+v+SHLQkYRl+
  Sobic.001G227900.1.p 195 KSRLSWTTQLHRQFIAAVNSLG--EKAVPKKILETMKVKHLTREQVASHLQKYRLH 248
                           68*******************4..88****************************97 PP
2Response_reg518.1e-18121201109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl++d + + +++++++l k  y +v++ +d +ea+  +  +   +Dli+ D+  p+ d l +l+e +++  ++p ++++++g+ + + 
  Sobic.001G227900.1.p  12 VLVIDNNSSYLSVMEELLIKCSY-KVTSYKDVREAMSFIYGNIqiVDLIISDVCFPTEDSLLILQEVTTKF-DIPTVIMSSNGDASIVM 98 
                           89*********************.***************555557**********************9999.9**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           +++  Ga+dfl Kp+ +e l +
  Sobic.001G227900.1.p  99 KYITSGASDFLIKPVRIEVLKN 120
                           ***************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.25E-258144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-279134No hitNo description
SMARTSM004482.9E-1310122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.51311126IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.4E-1412120IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.15E-1513126No hitNo description
PROSITE profilePS5129412.328192250IPR017930Myb domain
SuperFamilySSF466894.57E-17193251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-25194252IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-24195248IPR006447Myb domain, plants
PfamPF002491.4E-7197246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDRELWPSGL RVLVIDNNSS YLSVMEELLI KCSYKVTSYK DVREAMSFIY GNIQIVDLII  60
SDVCFPTEDS LLILQEVTTK FDIPTVIMSS NGDASIVMKY ITSGASDFLI KPVRIEVLKN  120
IWQHVFRKQL IGENRSCSNS AQHLDQVSYP PTIAPASTCA TRTTGIITEA ATATLESATR  180
ETTNGTVTDI QDLRKSRLSW TTQLHRQFIA AVNSLGEKAV PKKILETMKV KHLTREQVAS  240
HLQKYRLHLR KLNQTLHKDD TPSPSSHPNE SNILRTEFNS SLNSTYFDQD GCLEITEYSL  300
PKDDISSGSD CMLGERNNYS PQGFQDFRWD SEKQGSETTY LWNFEAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16194253464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G227900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464520.20.0two-component response regulator EHD1
SwissprotQ7Y0W31e-143EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A1B6QKF90.0A0A1B6QKF9_SORBI; Uncharacterized protein
STRINGSb01g019980.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Representative plantOGRP1705633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.15e-51response regulator 12