PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G157400.1.p
Common NameSb01g013710, SORBIDRAFT_01g013710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 855aa    MW: 93045.9 Da    PI: 6.5847
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G157400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-182885457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Sobic.001G157400.1.p 28 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                          6789****************************************************97 PP
2START174.18.8e-551763832204
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  
  Sobic.001G157400.1.p 176 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGng 263
                           68999*****************************************************.8888888888******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+
  Sobic.001G157400.1.p 264 GTIELIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLD 352
                           ****************999****************************9999999*********************************** PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                           +++++++lr+l++s  + ++kt+ a+l++ +
  Sobic.001G157400.1.p 353 AWSVPEVLRPLYESPKILAQKTTIAALRHIR 383
                           **************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4352286IPR001356Homeobox domain
SMARTSM003892.6E-152490IPR001356Homeobox domain
SuperFamilySSF466896.84E-172689IPR009057Homeodomain-like
CDDcd000863.02E-162787No hitNo description
PfamPF000465.1E-162885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-182985IPR009057Homeodomain-like
CDDcd146861.81E-679118No hitNo description
PROSITE profilePS5084826.956166366IPR002913START domain
CDDcd088752.81E-70170386No hitNo description
Gene3DG3DSA:3.30.530.201.7E-24174358IPR023393START-like domain
SMARTSM002348.2E-47175385IPR002913START domain
SuperFamilySSF559611.04E-38176386No hitNo description
PfamPF018521.6E-52176383IPR002913START domain
PfamPF086701.8E-50711853IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MAMVVVGGGK DRSSPGGGGA PQVDTGKYVR YTPEQVEALE RVYSECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSRL  120
VYENGYMRQQ LHNPSAATTD TSCESVVTSG QHHQQQNPAA PRPQRDANNP AGLLAIAEET  180
LAEFLSKATG TAVDWVQMVG MKPGPDSIGI IAVSHNCSGV AARACGLVSL EPTKVAEILK  240
DRPSWYRDCR CVDILHVIPT GNGGTIELIY MQTYAPTTLA APRDFWTLRY TSGLEDGSLV  300
ICERSLTQST GGPSGPNTPN FVRAEVLPSG YLIRPCEGGG SMIHIVDHVD LDAWSVPEVL  360
RPLYESPKIL AQKTTIAALR HIRQIAHESS GEMPYGGGRQ PAVLRTFSQR LSRGFNDAVN  420
GFPDDGWSLM SSDGAEDVTI AINSSPNKLI GPHVNSSQLF TTIGGGILCA KASMLLQNVP  480
PALLVRFLRE HRSEWADPGV DAYSAAALRA SPYAVPGLRA SGFMGSQVIL PLAHTLEHEE  540
FLEVIRLEGH SLCHDEVVLS RDMYLLQLCS GVDENAAGAC AQLVFAPIDE SFADDAPLLP  600
SGFRVIPLDA KTDPPSGTRT LDLASTLEVG SGGTTRASSD ASSTCNTRSV LTIAFQFSYE  660
NHLRESVAAM ARQYVRTVVA SVQRVAMAIA PSRLGGQLEM KQTPGSPEAH TLARWIGRSY  720
RFHTGAELLR TDTQCTDASL KALWQHSDSI MCCSLKAAPV FTFANQAGLD MLETTLIALQ  780
DISLEKILDD DGRKALCTEY PKIMQQGFAY LPGGVCVSSM GRPVSYEQAV AWKVLSDDDT  840
PHCLAFMFVN WSFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G157400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464180.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLC5WR860.0C5WR86_SORBI; Uncharacterized protein
STRINGSb01g013710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]