PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G140200.1.p
Common NameSb01g012200, SORBIDRAFT_01g012200
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 335aa    MW: 36797.9 Da    PI: 5.4895
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G140200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.3e-092492822255
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                            +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  Sobic.001G140200.1.p 249 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 282
                           59*****************************885 PP
2ELK33.58.9e-12202223122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK +Ll+KYsgyL+sL+ E+s
  Sobic.001G140200.1.p 202 ELKSRLLNKYSGYLSSLWRELS 223
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1962106IPR005540KNOX1
PfamPF037903.4E-2064104IPR005540KNOX1
SMARTSM012562.3E-28111162IPR005541KNOX2
PfamPF037913.9E-22117160IPR005541KNOX2
PfamPF037891.9E-8202223IPR005539ELK domain
SMARTSM011881.4E-6202223IPR005539ELK domain
PROSITE profilePS5121310.284202222IPR005539ELK domain
PROSITE profilePS5007112.471222285IPR001356Homeobox domain
SuperFamilySSF466892.69E-18224291IPR009057Homeodomain-like
SMARTSM003892.4E-11224289IPR001356Homeobox domain
CDDcd000861.81E-12225285No hitNo description
Gene3DG3DSA:1.10.10.601.2E-25227286IPR009057Homeodomain-like
PfamPF059207.3E-16242281IPR008422Homeobox KN domain
PROSITE patternPS000270260283IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEELPALAS GSKAATTTPF YLALDHRASA TSSSPPAEAP TPPPPSAVSD PSRQSNSERG  60
SEIIKAKIMS HPLYPALLRA FIDCRKVGAP PETVGRLSAL ADEVEMNSDD RQEQRPADPE  120
LDQFMEIYCH MLVRYRQELT RPIQEADEFF RSMEAQIDSF SLDDNGYEEG GGSSDEDEQE  180
TGDLGGLPVP AETGSPSGED KELKSRLLNK YSGYLSSLWR ELSRKKKKGK LPRDARQKLL  240
HWWQLHYRWP YPSELEKAAL AESTGLDAKQ INNWFINQRK RHWKPAPPTM GLATGDYRLG  300
SHGGGGGGSS SSANAGLRVE GQYFTGGSSY PRGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G140200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406220.0BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464092.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX71e-143KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLC5WPQ50.0C5WPQ5_SORBI; Uncharacterized protein
STRINGSb01g012200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-74KNOTTED-like from Arabidopsis thaliana