PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G132200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 1250aa    MW: 134658 Da    PI: 3.9153
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G132200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-1010341056527
                            --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                            +Crf++ tG C+yG++C+F+H++
  Sobic.001G132200.2.p 1034 NCRFYMSTGSCSYGSSCHFNHPR 1056
                            7********************96 PP
2zf-CCCH28.13.5e-0910921115427
                            ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                            ++C +++r+GtC+yG +C+++H++
  Sobic.001G132200.2.p 1092 RNCTYYMRYGTCRYGKKCCYNHPE 1115
                            79********************96 PP
3zf-CCCH19.22.2e-0612201243427
                            ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                             +C+++++ G+Ck+  +CkF+H++
  Sobic.001G132200.2.p 1220 LECPHYMKHGYCKFQMNCKFHHPR 1243
                            58********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.86410291057IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-410291056IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-510331056IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-810341056IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-510351055IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-410881115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.56310881116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-510911116IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-710921115IPR000571Zinc finger, CCCH-type
SMARTSM003560.1612161243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.97212161244IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-412201243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-512201246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1250 aa     Download sequence    Send to blast
MAGVEDEDEF KDALGAAVPP PCSQSPKPAS KSKPATGGGG GGGGLGRRLF ASIPLPATLS  60
AAIGRFSSPK PPASNVGLGL LLDAGAGLDP SADGPPASYD AAASGGGGSL HMPSFAALQR  120
QHGDDQVAGR GAGAGLEELG LVPAEEEWGT TEDSREKVGL AVDVRSGNRN CFPTRGQEEE  180
GEQCPGEQCP GDELGAAVAQ DQEVVVEQQG GTEDCAAVVE DDSNYSHAAV EQCAGDETRA  240
VKASNDVEVN ERVIKQECAG DILDAAEDGV SVGLQEEENA VVEEQGVDVI SVQDQHEVVE  300
QCAGDQLTTT TDGNAAQDQE VVVEQEGATE WYTALEAVEQ WSDDGSKAGK DGGIVEEEKG  360
VEEEGAVGLL LDAAKDGAPV ESQEEDDLVV AEQNEDDISS QDQHKVAEQS ISDQLRTTTD  420
GNAAQDQEVV LHKDCVTVEP QEENVVVAEH GEDGISVQDQ HKVVEQCSSG QPRTTMDDNA  480
SEGQGVVEQE GAIFYMDATT DDIAVEDQEK LMKESDGDES RATRDENSVE VKDKVVDQEG  540
VVDEYGVFKD GCGAELLKNN VVAVEQVEDG ISLSDEDNMV ELYTSDQLRS TLDDHAAENQ  600
KAVEQEGDIV ERVVTTNRIA GEDQEKEVEQ SAGDESRSTK DENGLEDNEN VDPEDVINIQ  660
GVNNDVSCVE AQEEDVVVVE QGGDDMSAGD EGNAVEQCTN DWLRATMEVN AAEFQELVEQ  720
GGAIFEKGMT AGGITVEDQD KEAEQSAGDE SSVTEGENAV EGNKKVDQED AINRQGTAKE  780
DSGVEPQEEE NVVDPDQGVD GLSVLDEGNV VAQCTSDQLR TTMEDNAAEL REVVEQEGAI  840
FEKGVASHGI TVEDQDKEME QSAGDEARAT KGENAVEDKK VYQEDAIDKQ GATKDCSGVE  900
SQEENMVVPD QGMDGLSVLD EGNVVPQCTS DQLRTTTDNN AAADPEVPEQ EGVGSILGAA  960
KVDIAVEESR EEDIMVAEQV ENGVFVQDQD EAVEQHTSDQ LKTIADNNDV EDQEVHREKI  1020
VLSEGYPQRP GKLNCRFYMS TGSCSYGSSC HFNHPRLKAK LEVSSFPSEQ RNHEVEFLEL  1080
NRVGLPIREG ARNCTYYMRY GTCRYGKKCC YNHPEQVLDV QIHTATGWDD TNLQSSPHSK  1140
KSPEHGTMDD TRFSPEVLPP NIIRMLLPPQ NVPPCTEEKE MRIKKGVIDG TDYGHDFATK  1200
SQNVLQQHEQ AIYPERPGEL ECPHYMKHGY CKFQMNCKFH HPRDRLPKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G132200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0372684e-64BT037268.1 Zea mays full-length cDNA clone ZM_BFb0160O02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318825.10.0uncharacterized protein LOC8054148 isoform X1
RefseqXP_021318829.10.0uncharacterized protein LOC8054148 isoform X1
TrEMBLA0A1Z5S5G30.0A0A1Z5S5G3_SORBI; Uncharacterized protein
STRINGSb01g011590.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-31C3H family protein