PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G128800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C3H | ||||||||
Protein Properties | Length: 377aa MW: 39336.1 Da PI: 8.9945 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.4 | 5.1e-08 | 241 | 261 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ar G+Ck G+ C+F Hg Sobic.001G128800.1.p 241 PCLYYAR-GYCKNGSACRFVHG 261 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.037 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0032 | 238 | 262 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 239 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 240 | 261 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 241 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MTAPWTAART HLSRPQGAVF CTSRTRLAPA HAPRHPCAPL GASRARSRPR SPRARTLRQA 60 RRSDRRAPND RTQCPPPPLT RRFCLSRHNS GRCGAGTAPS PLSVSSPSSW VAPPVFSRSN 120 SVISNGAAAE EALTAAVADD LMSPAAGGNA PPSPFFAAGD PLLDELQLQE QLAFLNDAAA 180 DHQLPLFDAA SECRSPGAGD ATGFFPYGGL GWANGGGPGH RRSSSVSELC LGSADGLGWK 240 PCLYYARGYC KNGSACRFVH GGLPDDATTL AGAKMDTTTL EQQCQDILFR SKSQRLAAAA 300 AAAFPYSPTD SLPGSPSAAT KCLSLLLQQQ QNENQRAAAA TTAAALMLGG DDAHKFSGRP 360 RLDCADLASM MNPGSR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.11263 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G128800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309506.1 | 1e-152 | zinc finger CCCH domain-containing protein 53 isoform X1 | ||||
Swissprot | Q0D3J9 | 1e-110 | C3H53_ORYSJ; Zinc finger CCCH domain-containing protein 53 | ||||
TrEMBL | A0A1B6QIQ7 | 0.0 | A0A1B6QIQ7_SORBI; Uncharacterized protein | ||||
STRING | Sb01g011290.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1433 | 11 | 15 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G128800.1.p |
Publications ? help Back to Top | |||
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