PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G069400.1.p

Common Name

Sb01g006270, SORBIDRAFT_01g006270

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GeBP

Protein Properties

Length: 261aa MW: 28586.2 Da PI: 9.6511

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G069400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	30.7	9e-10	70	162	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +qr w ++Dei+lL ++ + ++k+g ps d a + + + + +q+ +++ L+ ++ + + k+g + +k++d i+ l Sobic.001G069400.1.p 70 PQRSWPDSDEIALLEAVASHRKKHGRLPSPDELAAALRGRIFSEERLTAEQVAKRLLALRTRYGNAAIRLKRG--IIPAKDSDLTIYRL 156 79**********************999997777777777778899****************996666..556789999* PP DUF573 92 skkiWg 97 sk iW Sobic.001G069400.1.p 157 SKLIWA 162 ***6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.6E-15	71	161	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MASEERPSPV PSDDTTTTTV SDEHLSPPSS PSTTFDSAPE SDVSAASSLL SDGSSGPDPE 60 PIVSRKPRPP QRSWPDSDEI ALLEAVASHR KKHGRLPSPD ELAAALRGRI FSEERLTAEQ 120 VAKRLLALRT RYGNAAIRLK RGIIPAKDSD LTIYRLSKLI WADTRKGKME KKTRAPDARE 180 DPRGFDELTE LYPCLSAEAE AIDARCGYGS LKRAFGRIGD DTAARLEAKL KRQRVAEARQ 240 SAKLDRLRTD VANALQKFIK *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	233	KLKRQR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.21240	0.0	pollen

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G069400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466354.1	0.0	uncharacterized protein LOC8084155
TrEMBL	C5WZ21	0.0	C5WZ21_SORBI; Uncharacterized protein
STRING	Sb01g006270.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14023	5	5
Representative plant	OGRP12818	2	2

Link Out ? help Back to Top
Phytozome	Sobic.001G069400.1.p
Entrez Gene	8084155