PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_14769.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 156aa    MW: 18095.8 Da    PI: 10.1848
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_14769.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.3e-113464190
                             TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                             ++g++W vk+  ++ +    l++GWk+F+k+n+L+ gD +vF+++g+ ef
  Sme2.5_14769.1_g00001.1  3 LTGKKWLVKV--NGWR----LEEGWKKFAKENDLQLGDLLVFRHEGNLEF 46
                             579*******..6665....9**********************9987444 PP
2B347.53.3e-15481221795
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                              +lpk+fa ++g+ + ++++l+++de+ r W+++l    ++++ +vl+ GW +F+ an L+egD ++F+++++ ++++  k
  Sme2.5_14769.1_g00001.1  48 RLPKRFAMANGLFN-KKRDLIIRDERQRLWNLRL--APYGSSvHVLG-GWIHFCTANSLQEGDYMMFEVVSN-GEKPIWK 122
                              59********7664.5569***************..88888857777.********************8874.4445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.98E-10142No hitNo description
PROSITE profilePS508637.415131IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-11346IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-10446IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-7445IPR003340B3 DNA binding domain
PROSITE profilePS5086312.60532126IPR003340B3 DNA binding domain
SMARTSM010194.6E-835126IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-1548124IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-1348111No hitNo description
Gene3DG3DSA:2.40.330.102.9E-1448124IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-1248123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MVLTGKKWLV KVNGWRLEEG WKKFAKENDL QLGDLLVFRH EGNLEFERLP KRFAMANGLF  60
NKKRDLIIRD ERQRLWNLRL APYGSSVHVL GGWIHFCTAN SLQEGDYMMF EVVSNGEKPI  120
WKFRSITDRR HKTSDVATPI SQAPASTSAD ANPYFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754473e-57HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084058.11e-47putative B3 domain-containing protein REM15
TrEMBLA0A2G2UZA41e-48A0A2G2UZA4_CAPBA; Uncharacterized protein
STRINGXP_009767536.19e-38(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-16B3 family protein