PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_12177.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 362aa MW: 40615.5 Da PI: 4.634 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.7e-10 | 165 | 207 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N +++ Lr+++Pk + K++ +iL +++Y k+L Sme2.5_12177.1_g00001.1 165 MAERRRRKRLNGRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 207 79*********************66......**************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.405 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-14 | 162 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-10 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 165 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00163 | 165 | 217 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-14 | 165 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEDYYRENGN LLDELFALRS DLWESTCLPM EMDSSNFYCN NNNYDCFGDI PLSSSTTTTT 60 TTTTTTTSFE DYNTNFPIDQ SQHCSLLLGG LPPQEMFISP FSSQVEDLSS IFEVGNFGNC 120 KLERTQSTES SAAIAPANFN NIGLLCPNKK AKTNKSNGEP SKNLMAERRR RKRLNGRLSM 180 LRSIVPKISK MDRTSILGDT IDYTKELLEK INNLQQEMEL GPSELSLMSI FKNEKPIEMF 240 VRNSPKFNVE RRNNIDTRVE INCAGKSSLL LSTLTTLDAF GLEPQQCVIS CFNDFAMQAS 300 CSEGGTEQVE NEKNHHVEQG GFMQNGSMRD SAEQEVEQRG VINAEEIKQA LFRNAGYAGK 360 CI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 173 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-67 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 1e-67 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060938.1 | 1e-155 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 1e-61 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A1U8ERP3 | 1e-130 | A0A1U8ERP3_CAPAN; transcription factor bHLH61-like | ||||
STRING | Solyc12g088130.1.1 | 1e-153 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-57 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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