PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_11740.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 313aa MW: 36077.6 Da PI: 6.6979 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 57.4 | 4e-18 | 6 | 91 | 7 | 97 |
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 ws+eDei++L+G+++ ktgks d a+ye +k+s++ + +++ +l +Kir L++K+ kk k + + s++h+q+ f ls Sme2.5_11740.1_g00001.1 6 WSKEDEITILKGVVNL--KTGKSKRIDYVALYESIKQSLDREsATQVDLQKKIRCLREKYYKKNLK----RARNPSTQHEQELFYLSD 87 ***************9..899999***************87527889*************999888....55667899********** PP DUF573 94 kiWg 97 ++Wg Sme2.5_11740.1_g00001.1 88 RVWG 91 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.2E-16 | 6 | 91 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MAYSGWSKED EITILKGVVN LKTGKSKRID YVALYESIKQ SLDRESATQV DLQKKIRCLR 60 EKYYKKNLKR ARNPSTQHEQ ELFYLSDRVW GDHHDIYPQS DGVWGEHHDI YPQSDRVWGE 120 HHDIYPHRDR VWGEHHDIYP HLTISSSSYI RPLDMEATDK ILVGDLGLAL TTISRNHSNP 180 LQAALQQYKL VSQSLTTRKA YGNQILEALI TPEKEGHSEL EEQKIARSYF NTKIQHAQLV 240 SDAYHASHGF DLEMAILSIV YTNQIKVMPN LSAETVLVIN NLFAAYYLLC VWQQASMPDS 300 LEETPSLHCS TTH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884924.1 | 1e-72 | uncharacterized protein LOC101248824 isoform X3 | ||||
TrEMBL | A0A3Q7FFG3 | 2e-70 | A0A3Q7FFG3_SOLLC; Peptidylprolyl isomerase | ||||
STRING | Solyc02g005290.2.1 | 4e-71 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13760 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-11 | DNA-binding storekeeper protein-related transcriptional regulator |