PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_11705.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 227aa MW: 25811.5 Da PI: 8.212 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 129 | 1.6e-40 | 59 | 152 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 reqdrf+Pi nv+rim k+lP +aki +d+k t+qe vsefisf+ sea+++c+re+rkti+++d++wa+ ++Gf+dy++ l++yl Sme2.5_11705.1_g00001.1 59 REQDRFVPIMNVIRIMCKILPPHAKIVDDSKMTIQEYVSEFISFIISEANNHCHREQRKTITAEDVIWAMRSVGFDDYIKLLTLYL 144 89************************************************************************************ PP NF-YB 88 kkyreleg 95 ++y +g Sme2.5_11705.1_g00001.1 145 HHYCAYDG 152 ***87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.9E-39 | 52 | 156 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.26E-28 | 61 | 154 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.2E-19 | 64 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 9.4E-10 | 92 | 110 | No hit | No description |
PRINTS | PR00615 | 9.4E-10 | 111 | 129 | No hit | No description |
PRINTS | PR00615 | 9.4E-10 | 130 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDNDNRIIGS GNGGFQTYRR STQPTPACFL SPATKMKREL PASLNQAAAN GQNSKCTIRE 60 QDRFVPIMNV IRIMCKILPP HAKIVDDSKM TIQEYVSEFI SFIISEANNH CHREQRKTIT 120 AEDVIWAMRS VGFDDYIKLL TLYLHHYCAY DGGKCESLRR KPLLLKHPIV HLPPNFQMAY 180 HQYGYFVFPQ VMCHGCMQGD ASNVRTSQYA VADVDSEGES LTKESNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-44 | 54 | 147 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168332.1 | 3e-83 | PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1 | ||||
Refseq | XP_015168333.1 | 3e-83 | PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1 | ||||
Swissprot | Q84W66 | 3e-52 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A1U8F2B7 | 2e-69 | A0A1U8F2B7_CAPAN; Nuclear transcription factor Y subunit B-9 | ||||
TrEMBL | A0A2G2Y492 | 2e-69 | A0A2G2Y492_CAPAN; nuclear transcription factor Y subunit B-6 isoform X1 | ||||
STRING | Solyc05g005380.1.1 | 6e-76 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 1e-54 | nuclear factor Y, subunit B6 |