PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_11653.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 458aa MW: 51733.6 Da PI: 8.8836 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.5e-13 | 283 | 328 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ Lr+llP+ +K +Ka++L ++eY+ sL Sme2.5_11653.1_g00001.1 283 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLACTTEYLASL 328 68899********************97.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.656 | 279 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.74E-12 | 279 | 333 | No hit | No description |
SuperFamily | SSF47459 | 1.11E-16 | 280 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-16 | 283 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-10 | 283 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-14 | 285 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MSSGGIYNGK NDVAQRLFEE YKHSWLIMDN GRIPGLAFKN NLPYIELQFA DLQSHASNAV 60 QLQFYHEAGI KTTICMGCSI GEIEFGMTSR PPVNLEMGMK NLFPEYFSTR SGLPHHQTVL 120 PIDQNRPSPS SSFSLDSPGE YPSLLFNVAS TSYVPEPHAF SEQTIRPVST TDMTYHQIRG 180 IQFPRVETED AALTRAYLAV MTSPSTSSSS QQSRENINVP KDHYQKPTAF RRFRSGNVQI 240 GATRTTTRRE NMLRRSITFF RNLNMMRRQD QQIQRAPTST QVHHMISERR RREKLNDSFQ 300 LLRSLLPPGT KKDKASVLAC TTEYLASLKG QVEEFSKKNE RLEAELVKAE MRSDGIIRSC 360 SDGNERVVVK ITNVGESSLS ESRVVELQVS VRGECSVLDL AIRLLQFLKT HSHLTLDSVA 420 ANTSSMLTRI TLRIRIQGSE WDESAFEEAA KRVVDDLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 287 | 292 | ERRRRE |
2 | 288 | 293 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579365.1 | 0.0 | PREDICTED: putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A1U8H7Q5 | 0.0 | A0A1U8H7Q5_CAPAN; putative transcription factor bHLH041 isoform X1 | ||||
STRING | Solyc07g039570.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4567 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 7e-59 | bHLH family protein |