PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07724.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 186aa MW: 21399.8 Da PI: 5.8649 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 131.2 | 3.4e-41 | 55 | 148 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 req++f+P n++rim+k+lP ++k+s+++k t+qec++ef+sfvt+ea+d+cq+e+ kti+ + llwa+ +lGf+dy+epl ++l Sme2.5_07724.1_g00002.1 55 REQEHFMPTPNMVRIMRKILPPQTKVSDESKVTTQECITEFMSFVTGEANDRCQQEQHKTITVEHLLWAMDKLGFDDYIEPLALFL 140 89************************************************************************************ PP NF-YB 88 kkyreleg 95 ++y +++g Sme2.5_07724.1_g00002.1 141 HRYHQFDG 148 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-36 | 51 | 145 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.8E-29 | 57 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-19 | 60 | 124 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.3E-11 | 88 | 106 | No hit | No description |
PRINTS | PR00615 | 2.3E-11 | 107 | 125 | No hit | No description |
PRINTS | PR00615 | 2.3E-11 | 126 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MLNRPGDNLS TFEVVVRSVY ILPSPDLTYG NPLGDYLLLP TAIVVTTKDL ECVIREQEHF 60 MPTPNMVRIM RKILPPQTKV SDESKVTTQE CITEFMSFVT GEANDRCQQE QHKTITVEHL 120 LWAMDKLGFD DYIEPLALFL HRYHQFDGRG LLKGELLVLQ PLVFRLQHHA LSPTSKFFDV 180 SSPWLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-45 | 54 | 145 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018629766.1 | 8e-55 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | Q84W66 | 2e-46 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A1S3XJV1 | 2e-52 | A0A1S3XJV1_TOBAC; nuclear transcription factor Y subunit B-3-like | ||||
STRING | XP_009613315.1 | 6e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 5e-49 | nuclear factor Y, subunit B6 |