PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07162.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 489aa    MW: 55016.6 Da    PI: 10.8265
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07162.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-09754145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-....HHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt....lkqcksrwq 45
                             +++W t+E+++l  av+++G+++W+ +a+++   Rt    ++ ck r+ 
  Sme2.5_07162.1_g00002.1  7 KMNWGTWEELILGSAVRRHGTRDWNVVASELR-ARTiyftPEACKARYE 54
                             689*****************************.7761111556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-5664IPR009057Homeodomain-like
SMARTSM007179.3E-6659IPR001005SANT/Myb domain
PROSITE profilePS500906.574657IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5756IPR009057Homeodomain-like
PfamPF002493.2E-8756IPR001005SANT/Myb domain
CDDcd001678.15E-6953No hitNo description
SuperFamilySSF473704.58E-18260366IPR001487Bromodomain
SMARTSM002971.5E-16262366IPR001487Bromodomain
Gene3DG3DSA:1.20.920.109.8E-17265386IPR001487Bromodomain
CDDcd043691.47E-14265361No hitNo description
PfamPF004395.7E-11270350IPR001487Bromodomain
PROSITE profilePS5001410.277277347IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGVGPRKMNW GTWEELILGS AVRRHGTRDW NVVASELRAR TIYFTPEACK ARYEDLRKRY  60
SGCTALFEEL RKRRVEELKR ELARFESSIG SLESKIESLK AERERSGQID CGLSHTESPA  120
PLTKSEDIES SVKEEAKDGL SAGSFTLDIR TNRSPESQVP TIPSATETVV KLELSESWGR  180
DKAPSTSKVP VAANGNGGAV RKRRGKRRRK DTGWDAKEGS IEDSDNVCST SLASTSHCKE  240
VLTSCDQSLR HSAASDHRGG LSRFRNDDLM RIFNTITQHE AAMVFRHRLD SQKRARYKKM  300
IRRHMDIETA RARLANWSIK TPGELFRDFL LLANNAMVFY SKRTREYKAA MALRDIVTRA  360
YREHYKGSYY KATSALLPLP IIGNPPGKPR SVRPRPSKDK LQAKYGNSIF AGTLGRQNHK  420
PGDADSKVPL QSLLPGKKGI KRPGKIKSGS TTETVTTQTK VQASPHNIKS KKDHRIRPVT  480
KESKRARQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15673RKRYSGCTALFEELRKRR
2202210RRGKRRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347091.10.0PREDICTED: uncharacterized protein LOC102580063
TrEMBLM1C1L50.0M1C1L5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000577580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-12DNA-binding bromodomain-containing protein