PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_07064.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 845aa MW: 95686.8 Da PI: 9.0099

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_07064.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.1	7.9e-11	12	58	1	48
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrF Pt e + +yL++kv+g++++l ++i+e+d+yk++P Lp Sme2.5_07064.1_g00002.1 12 LPPGFRFYPTHEKRLFQYLCRKVAGDDFSL-QIIAEIDLYKFDPCVLP 58 79*************************9.89**********998 PP
2	NAM	44.3	5.5e-14	59	101	85	128
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tg+dk ++s +g++vg+kk Lvfy g+apkg+kt+W+mh yrl Sme2.5_07064.1_g00002.1 59 TTGTDKVITS-QGRKVGIKKALVFYIGKAPKGTKTNWIMHKYRL 101 5899999999.999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.623	1	125	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-33	8	125	IPR003441	NAC domain
Pfam	PF02365	1.1E-9	13	101	IPR003441	NAC domain
SuperFamily	SSF56672	7.03E-59	543	784	No hit	No description
Gene3D	G3DSA:3.10.10.10	2.3E-24	549	691	No hit	No description
CDD	cd01647	1.30E-42	583	702	No hit	No description
CDD	cd09274	6.27E-42	697	793	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MHKPDPLAKL SLPPGFRFYP THEKRLFQYL CRKVAGDDFS LQIIAEIDLY KFDPCVLPTT 60 GTDKVITSQG RKVGIKKALV FYIGKAPKGT KTNWIMHKYR LSEPSTKSGS SSRLDDWVLC 120 WIYKKNSNMQ KTCSSGLQSK EISHGSSSSL PSQFNGMLES LAIIEDQYFS LPTRSFQQDD 180 NKLNIQQQGC GNFDWTTLAG FNSFPKLTAR NQAPAHAYGS TDKLVFAPVR YWTDVAMTSL 240 RCITTTRKSY GSTDKLVFAP KIPSKRIVTQ RDDLAPAAEN AQLEVLLVAS RGNSQGPQAP 300 SSISPESSAT TRPRDFLRMN MLVYTRSKVE EDLPNFIDEM YKVLKGMHAN EIERVELASY 360 QLKDIVNVWY NQWEDSRDRL GTSNLSTRRG DEVKGTAEHS PPQHPQLAII RGVLLQDQED 420 TPDVVTSMFC VFTFDCYVLF DPGATLYSVT PYVAGKFGIL LECFLEPFVI STLTEWKGSS 480 VAPKGKFISY LRAKKFISKG CIYHLVRVKS DDAEFSTLES VPIVNEFPEV FLNDLPGVPP 540 DRKIEFGIDV LPKTQPISIP PYRMASAKLE ELNEQLKDLL EKGFIRPNVS SFGAPVLFMH 600 KKDGPIRMCI NYWQLLKVTI KNKYPLLSLY DLFDQLQGAT CFSKIDLRSS YHQLKVRESD 660 IPKTAFRTRY GHFEFLVMSF GLTNAPVSFM DLTNRIRKVI AYASRQLKIH KKNYLTHDLE 720 LMTVVFALKT WCHYLYGVHV DVFTNHKSLQ YIFSQKELNL RQKRWLDLLN DYDMSILYHP 780 GKANIVVDAL SRLSMGSTTD VEEGKRELAK EVHRLALLGV QLEENNEGGV NVQNGSASSL 840 VSGSS

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MHKPDPLAKL SLPPGFRFYP THEKRLFQYL CRKVAGDDFS LQIIAEIDLY KFDPCVLPTT  60
GTDKVITSQG RKVGIKKALV FYIGKAPKGT KTNWIMHKYR LSEPSTKSGS SSRLDDWVLC  120
WIYKKNSNMQ KTCSSGLQSK EISHGSSSSL PSQFNGMLES LAIIEDQYFS LPTRSFQQDD  180
NKLNIQQQGC GNFDWTTLAG FNSFPKLTAR NQAPAHAYGS TDKLVFAPVR YWTDVAMTSL  240
RCITTTRKSY GSTDKLVFAP KIPSKRIVTQ RDDLAPAAEN AQLEVLLVAS RGNSQGPQAP  300
SSISPESSAT TRPRDFLRMN MLVYTRSKVE EDLPNFIDEM YKVLKGMHAN EIERVELASY  360
QLKDIVNVWY NQWEDSRDRL GTSNLSTRRG DEVKGTAEHS PPQHPQLAII RGVLLQDQED  420
TPDVVTSMFC VFTFDCYVLF DPGATLYSVT PYVAGKFGIL LECFLEPFVI STLTEWKGSS  480
VAPKGKFISY LRAKKFISKG CIYHLVRVKS DDAEFSTLES VPIVNEFPEV FLNDLPGVPP  540
DRKIEFGIDV LPKTQPISIP PYRMASAKLE ELNEQLKDLL EKGFIRPNVS SFGAPVLFMH  600
KKDGPIRMCI NYWQLLKVTI KNKYPLLSLY DLFDQLQGAT CFSKIDLRSS YHQLKVRESD  660
IPKTAFRTRY GHFEFLVMSF GLTNAPVSFM DLTNRIRKVI AYASRQLKIH KKNYLTHDLE  720
LMTVVFALKT WCHYLYGVHV DVFTNHKSLQ YIFSQKELNL RQKRWLDLLN DYDMSILYHP  780
GKANIVVDAL SRLSMGSTTD VEEGKRELAK EVHRLALLGV QLEENNEGGV NVQNGSASSL  840
VSGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-55	1	131	9	174	NAC domain-containing protein 19
3swm_B	8e-55	1	131	9	174	NAC domain-containing protein 19
3swm_C	8e-55	1	131	9	174	NAC domain-containing protein 19
3swm_D	8e-55	1	131	9	174	NAC domain-containing protein 19
3swp_A	8e-55	1	131	9	174	NAC domain-containing protein 19
3swp_B	8e-55	1	131	9	174	NAC domain-containing protein 19
3swp_C	8e-55	1	131	9	174	NAC domain-containing protein 19
3swp_D	8e-55	1	131	9	174	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3122	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	8e-65	NAC family protein