PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_06171.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | FAR1 | ||||||||
Protein Properties | Length: 211aa MW: 24353 Da PI: 4.7313 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.8 | 3.5e-08 | 106 | 184 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY+e+ + F +++++++ks+ + + f C k+ k+++++++ +r++C+a+++ ++dg vtk+++eHn Sme2.5_06171.1_g00005.1 106 SFYKEHNCLIDFGIVMKSTNKSS-YEYARYACFACDKSRKSTPRTTS----------KRVDCRARVNCLVKSDGSCWVTKVVTEHN 180 59****************99994.44467777888888877776555..........9**************************** PP FAR1 87 Hela 90 +l Sme2.5_06171.1_g00005.1 181 YQLE 184 *997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MPSYKMPKEH DEALDGGYGN GDGPDAFLDS SNENLPILRC EELNRFNQVE QESYQSVSDR 60 KESDFEDIWF EEDEEYPKID DNFSKQQYIE GHIEGMNLGS VEALFSFYKE HNCLIDFGIV 120 MKSTNKSSYE YARYACFACD KSRKSTPRTT SKRVDCRARV NCLVKSDGSC WVTKVVTEHN 180 YQLEPHLSLF FSCPRTISQT LKRSLESHDI A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 3e-06 | FAR1 family protein |