PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05768.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 636aa    MW: 71159.4 Da    PI: 7.0018
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05768.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.6e-11313369155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aa+ ++ a++k++g
  Sme2.5_05768.1_g00003.1 313 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEDKAARSYDLAALKYWG 369
                              78*******************87776664446655.77***99*************98 PP

2AP245.71.6e-14414463355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sme2.5_05768.1_g00003.1 414 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 463
                              9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-13313379IPR016177DNA-binding domain
PfamPF008472.5E-8313369IPR001471AP2/ERF domain
CDDcd000182.35E-17313377No hitNo description
PROSITE profilePS5103216.845314377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-11314378IPR001471AP2/ERF domain
SMARTSM003809.2E-21314383IPR001471AP2/ERF domain
PRINTSPR003673.9E-6315326IPR001471AP2/ERF domain
CDDcd000185.13E-25412473No hitNo description
SuperFamilySSF541711.44E-17412473IPR016177DNA-binding domain
PROSITE profilePS5103219.177413471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-18413471IPR001471AP2/ERF domain
SMARTSM003807.5E-34413477IPR001471AP2/ERF domain
PfamPF008472.7E-9414463IPR001471AP2/ERF domain
PRINTSPR003673.9E-6453473IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MKSLSNDNNS NNNWLGFSLS PHINSLEGPL TDHNHSTQPD SSSDVQSSVS RFSLNHLNYP  60
GMYYEGDNAS LFSSLSAMPL KSDGSLCIMK DFNRSQPPQG MVSSTPKLED FFGDATMRSN  120
HYEGCNRGGM AHSLHNIYYN QHQENETSNS QDFLNHIQEN TRQQQQQHYP DFSVFRGHEL  180
YHSIEQGETE CNNLQVPTMT SDEMSGMNNW VSRNYQNPTG HALEQNMIGC MADNGAESGS  240
VGAMTYGDFK SLSLSMSPGS QSSCVTGTQT QQISPTVTDC MALETTKRGP EKANHQKQIV  300
HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQGGY DMEDKAARSY  360
DLAALKYWGP STHINFPLEN YQQELEEMKN MTRQEYVAHL RRKSSGFSRG ASMYRGVTRH  420
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DISRYDVERI  480
MASNTLLAGD LARRKKDTET SKEICNQNLI ADASYHGEVN IQNKKENGNA VDWTMSLYQS  540
SSAGIDTNTM TSTIQGQMDE SVRMNTHLSN ASSLVTSLGS SREVSPTKNN VHSMHNLVMP  600
QSAPKLISSP VTNITSWISS AQLRPNVPVF AAWTDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363801.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-153ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A3Q7FD140.0A0A3Q7FD14_SOLLC; Uncharacterized protein
STRINGSolyc02g092050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-126AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]