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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05768.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 636aa MW: 71159.4 Da PI: 7.0018 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.1 | 6.6e-11 | 313 | 369 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+ ++ a++k++g Sme2.5_05768.1_g00003.1 313 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEDKAARSYDLAALKYWG 369 78*******************87776664446655.77***99*************98 PP | |||||||
2 | AP2 | 45.7 | 1.6e-14 | 414 | 463 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sme2.5_05768.1_g00003.1 414 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 463 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.47E-13 | 313 | 379 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-8 | 313 | 369 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.35E-17 | 313 | 377 | No hit | No description |
PROSITE profile | PS51032 | 16.845 | 314 | 377 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-11 | 314 | 378 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-21 | 314 | 383 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 315 | 326 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.13E-25 | 412 | 473 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-17 | 412 | 473 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.177 | 413 | 471 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-18 | 413 | 471 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-34 | 413 | 477 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-9 | 414 | 463 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 453 | 473 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MKSLSNDNNS NNNWLGFSLS PHINSLEGPL TDHNHSTQPD SSSDVQSSVS RFSLNHLNYP 60 GMYYEGDNAS LFSSLSAMPL KSDGSLCIMK DFNRSQPPQG MVSSTPKLED FFGDATMRSN 120 HYEGCNRGGM AHSLHNIYYN QHQENETSNS QDFLNHIQEN TRQQQQQHYP DFSVFRGHEL 180 YHSIEQGETE CNNLQVPTMT SDEMSGMNNW VSRNYQNPTG HALEQNMIGC MADNGAESGS 240 VGAMTYGDFK SLSLSMSPGS QSSCVTGTQT QQISPTVTDC MALETTKRGP EKANHQKQIV 300 HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQGGY DMEDKAARSY 360 DLAALKYWGP STHINFPLEN YQQELEEMKN MTRQEYVAHL RRKSSGFSRG ASMYRGVTRH 420 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DISRYDVERI 480 MASNTLLAGD LARRKKDTET SKEICNQNLI ADASYHGEVN IQNKKENGNA VDWTMSLYQS 540 SSAGIDTNTM TSTIQGQMDE SVRMNTHLSN ASSLVTSLGS SREVSPTKNN VHSMHNLVMP 600 QSAPKLISSP VTNITSWISS AQLRPNVPVF AAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363801.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-153 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A3Q7FD14 | 0.0 | A0A3Q7FD14_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g092050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-126 | AP2 family protein |