PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05716.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 341aa MW: 38291 Da PI: 7.042

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05716.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	8.7e-33	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQk+Rl Sme2.5_05716.1_g00005.1 22 KPRLKWTPDLHQRFVDAVSQLGGPDKATPKSLMRVMNIHGLTLYHLKSHLQKFRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.549	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-30	20	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-15	21	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-23	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	4.2E-7	24	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-21	142	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MALDQNAQQS KDMNLVLSSD AKPRLKWTPD LHQRFVDAVS QLGGPDKATP KSLMRVMNIH 60 GLTLYHLKSH LQKFRLGKSQ VTDQSFDESK QEDKLDLSAT VHDDDRGLKQ RTYFDTELSQ 120 SDHKLSLGVC DGSQNQMNES SQIARALQMQ MEVQRKLHQQ IEVQRHLQLR IEAQGKYLQS 180 VLRKAQETLA SYGTSSGVEL AKAELSQLAS MVNMGCCPSS SLSAITDIDG SISKDTHTKT 240 LKGGILCSIE SSLTSSESSA RKEDWNDMQN IKNSTSICLS LNQETKGKKR SRSNICDEQS 300 SGKRFFETID LNRKCPNEYD EIGPKVIDLN SKEVEQFHEY S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	1e-122	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571687.1	0.0	PREDICTED: uncharacterized protein LOC107869749 isoform X1
Swissprot	F4I274	3e-74	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A1U8GK93	0.0	A0A1U8GK93_CAPAN; uncharacterized protein LOC107869749 isoform X1
STRING	PGSC0003DMT400047413	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-73	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]