PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05661.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 584aa MW: 64717.3 Da PI: 8.8367

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05661.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	543	564	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ff + C+ G++C+F H+ Sme2.5_05661.1_g00002.1 543 PCVFFNKPKGCRNGSSCPFLHD 564 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.742	538	566	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.4E-4	543	565	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MDLKKLKKVS WASGPNLCQT KETLGNQEVL WPVLGKSSEV CRQSQDHLQL QGRLSNKYLA 60 KWKCPPKFNL NENWRVVAGE ESKEAGDQQR REKRVLEVVY PCAIPLNPYT SLDLDQDYDD 120 NQTPEIRIIP IEEEVDTEIP FHFTASQTNS SKSPDACLRN SPSSSVSIVT SQKLRANGKS 180 LPQSLSTFQN PKPPSNSPFS VRSPSNVQSS PPYLPRCQNL EGFEQTQVSP QPSVGYNAVP 240 QYWPTIKNVS TRDKPEISPD QSANQNHGPK YQTICENLLK YQVSGMTPAK HNPVTQNIPG 300 FEGDLTVAIA TAVAALAKSQ EQGSLIDTNL LVRLLLNPEE IPKLMNGREI ATSAKTVAAT 360 VDSLTAVMSR PADLLVPLPS TKPNKVIINP TNEYHAPQVG SGAIFEPKPM AKSAPLMMTK 420 PETSMKDNFF NEQGTPLPVE TTNFRESKSL VQQLTSDLNL EKIKKLINKY GVPNAGHTSH 480 FSSMTSPAPI HKDMNYYKSL IRQHGENCES VVDECVQNTY PHGNTQVSGL LKNQKPSQRS 540 LIPCVFFNKP KGCRNGSSCP FLHDISGQKR SGVMSEAWDS KRRK

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MDLKKLKKVS WASGPNLCQT KETLGNQEVL WPVLGKSSEV CRQSQDHLQL QGRLSNKYLA  60
KWKCPPKFNL NENWRVVAGE ESKEAGDQQR REKRVLEVVY PCAIPLNPYT SLDLDQDYDD  120
NQTPEIRIIP IEEEVDTEIP FHFTASQTNS SKSPDACLRN SPSSSVSIVT SQKLRANGKS  180
LPQSLSTFQN PKPPSNSPFS VRSPSNVQSS PPYLPRCQNL EGFEQTQVSP QPSVGYNAVP  240
QYWPTIKNVS TRDKPEISPD QSANQNHGPK YQTICENLLK YQVSGMTPAK HNPVTQNIPG  300
FEGDLTVAIA TAVAALAKSQ EQGSLIDTNL LVRLLLNPEE IPKLMNGREI ATSAKTVAAT  360
VDSLTAVMSR PADLLVPLPS TKPNKVIINP TNEYHAPQVG SGAIFEPKPM AKSAPLMMTK  420
PETSMKDNFF NEQGTPLPVE TTNFRESKSL VQQLTSDLNL EKIKKLINKY GVPNAGHTSH  480
FSSMTSPAPI HKDMNYYKSL IRQHGENCES VVDECVQNTY PHGNTQVSGL LKNQKPSQRS  540
LIPCVFFNKP KGCRNGSSCP FLHDISGQKR SGVMSEAWDS KRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340722.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 68
TrEMBL	A0A3Q7F931	0.0	A0A3Q7F931_SOLLC; Uncharacterized protein
STRING	Solyc02g084200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13292	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	3e-07	HB-other family protein