PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05639.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 32982.9 Da PI: 4.7999 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.3e-09 | 213 | 258 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+P +++ +e+L+ + +YIk Lq Sme2.5_05639.1_g00001.1 213 QSIAARQRRKKITDKTQELGKLIPGgH------RMNTSEMLQATFKYIKFLQ 258 67889*******************955......9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-11 | 205 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.84E-10 | 207 | 260 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-11 | 207 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.843 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-6 | 213 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-9 | 214 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MASVSYCSAA KLEPNVQEFD SEEMRIMQEL LFNFNYDVEP NFHENMDQDC YIDSFFNPDE 60 FILPFEMNNN SCFMPEYSVY EKQQDNYLPD SITSLTTHNS YFVSEYSVYE STTKRQKVFH 120 DNFLPNNIIT HTLSFMLGYS VFASTPKQQE DNFLPPPSLG FVPNPPIFQD FASYSLPEIP 180 MPIFSSGCSN NAGVVTRRSG GNNNNNEKKM SAQSIAARQR RKKITDKTQE LGKLIPGGHR 240 MNTSEMLQAT FKYIKFLQAQ AGLLEFMGSY EKDEKSFHTS DLQKLVGS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 9e-71 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541148.1 | 1e-126 | PREDICTED: transcription factor bHLH53-like | ||||
TrEMBL | A0A2G3DDP6 | 1e-125 | A0A2G3DDP6_CAPCH; Transcription factor bHLH87 | ||||
STRING | PGSC0003DMT400053651 | 1e-124 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-16 | bHLH family protein |