PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05578.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CAMTA
Protein Properties Length: 1077aa    MW: 121943 Da    PI: 8.2139
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05578.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-197.79.1e-3131118378
                     CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg.......... 77 
                              +e ++rwl+ +e+++iL n++k+ lt+e++ +p+  s++L++rk+v yfrkDG++w+kkkdgktv+E+hekLKv +          
  Sme2.5_05578.1_g00002.1  31 QEaHRRWLRLHEVCEILRNHQKFYLTQEPPLKPPGSSMFLFDRKVVPYFRKDGHHWRKKKDGKTVKEAHEKLKVINfftdcrqeal 116
                              55599*********************************************************************886666665554 PP

                     CG-1  78 .v 78 
                                
  Sme2.5_05578.1_g00002.1 117 mL 118
                              40 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143747.10326190IPR005559CG-1 DNA-binding domain
SMARTSM010765.5E-4029185IPR005559CG-1 DNA-binding domain
PfamPF038597.9E-2632105IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.5E-8522612IPR013783Immunoglobulin-like fold
CDDcd001021.95E-4524612No hitNo description
SuperFamilySSF812961.04E-17525611IPR014756Immunoglobulin E-set
PfamPF018331.3E-6525610IPR002909IPT domain
SuperFamilySSF484038.78E-17712819IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.6E-16715822IPR020683Ankyrin repeat-containing domain
CDDcd002041.64E-14718816No hitNo description
PROSITE profilePS5029716.175724816IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.167757789IPR002110Ankyrin repeat
PfamPF136065.8E-4757783IPR002110Ankyrin repeat
SMARTSM002480.002757786IPR002110Ankyrin repeat
SMARTSM002481100796825IPR002110Ankyrin repeat
SuperFamilySSF525402.39E-6925982IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001571931953IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.961932961IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059954976IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151955983IPR000048IQ motif, EF-hand binding site
PfamPF006120.0012958976IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.19910361064IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MDHSTQPLGL LLLQVFSSST FLCQYLEQIL QEAHRRWLRL HEVCEILRNH QKFYLTQEPP  60
LKPPGSSMFL FDRKVVPYFR KDGHHWRKKK DGKTVKEAHE KLKVINFFTD CRQEALMLFT  120
VTMPMGRTTS TFRGDVIGCL EKFYGRRNGE CVGKKMTADG KEIENTVLGG EQLEHIFLVH  180
YRDVKEEAEV NNHFFLQCIP AVNLWNVLMY AWSKMDNPKN TFDLLRSWEI IGRRNSEEDW  240
WILIPAYIWW TLQKERNARC FEGKVNSIQK IRVGASRLQP VHPGPLLENP ECSSTPCFES  300
VCRTVQESHT SSPSSVDWKE QGLSSELHSA DSRGLVFSRD SFQLNPQVRA FMRTDVYRSS  360
RNLNVMIQQK FYSAHLNVAD LLSSKLTYAR LNAGKAVANS RNRLTVTSGE GVEENIHVAP  420
AQIQNISSSQ TVVTLDTAVQ TSSLEGGHYS EEAVSLKKLD SFGRCMDREI GGDRDKSLMS  480
SDSGNCLNIL DTDNGDKEVS CLSRHMQLDT NFLGPSVSQE QLFSISEFAP DWAYSGGETK  540
VFIIGTFLDH EKHFTCQKWS CMFGEDEVSA EVLTQGIIRC QVPSHSPGRV PFYVTCSNRL  600
PCSEVQEFEY REKPSELALA LRPSDEVRLQ VQLAKFLYSG LNKKILDCSS GECEKCKLKT  660
QLCSLKGKTR NAFERLEDLL AIVECDHINF RDVQVQNFMK DKLYDWLVSR AHEEDKGPNI  720
LDDKGQGVIH LMAALGYEWG LHPLIATGIS PNFRDGHGRT ALHWAAHYGR EDTVIALIKL  780
GVAASAVDDP TAAFPWGRTA ADLASSRGHK GIAGYLAKLD LATHQQSLAT NNNALDNIGA  840
GLEAEKAFES TVQEFVPLNG TIDDDISLKS ALACLRKSAH DAALIQASFR ARSFHLRQLT  900
ECRNDVSEAS SDLAALGSLN KVQRVSHFED YLLSAAIKIQ QKYHGWEGRK DFLKIRNRIV  960
KIQAHARGYQ VRKQCKKFVW SVSILEKVIL RWRRKKKGLR GFQPEKTSQK GTLEFDKKDE  1020
YEYLSIGLKQ KFAGVEKALA RVQSMVRHPE ARDQYMRLVA KFESSKLDDG GRSSSPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165588.10.0PREDICTED: calmodulin-binding transcription activator 1-like isoform X3
TrEMBLM1B7C00.0M1B7C0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000387580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137161011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-127signal responsive 1