PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05467.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 136aa    MW: 15783.6 Da    PI: 7.8603
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05467.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.42e-4352127277
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              Cqve+C ad+++ak yhrrhkvCe+hsk+p vl+ gl+qrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk +
  Sme2.5_05467.1_g00001.1  52 CQVEQCPADMTNAKPYHRRHKVCEFHSKSPIVLIGGLQQRFCQQCSRFHLLEEFDEAKRSCRRRLADHNERRRKIT 127
                              *************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375758.6E-551136IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.103.5E-3644113IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.31749126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-4050129IPR004333Transcription factor, SBP-box
PfamPF031104.9E-3352125IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
METNKWEGKR SINEAEEEED EHESVEEDSK RKRVLTLSGR KLSGGGSAHP SCQVEQCPAD  60
MTNAKPYHRR HKVCEFHSKS PIVLIGGLQQ RFCQQCSRFH LLEEFDEAKR SCRRRLADHN  120
ERRRKITYDS PGESLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3643125284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1411961e-154EF141196.1 Capsicum annuum squamosa promoter binding protein-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306237.12e-83SQUAMOSA promoter binding protein-like
RefseqXP_015063347.12e-83squamosa promoter-binding protein 1 isoform X1
SwissprotQ387418e-56SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLQ0PY355e-82Q0PY35_SOLLC; Squamosa promoter-binding-like protein
STRINGSolyc02g077920.2.19e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-43squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]