PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05426.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 336aa MW: 37449.3 Da PI: 7.3253 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 109 | 160 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+ ++ + ++ + a+i+ A+e++k+L+ Sme2.5_05426.1_g00001.1 109 QRMTHIAVERNRRKQMNEHLSVLRSLMSES---YVQRGDQASIVGGAIEFVKELE 160 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-12 | 107 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.46E-12 | 107 | 164 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-15 | 107 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.646 | 108 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-10 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-8 | 114 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MALEALSTNE LLNFIMYDTI STTTTNNLDE NALFFDHHDD KNNNTYLLKS QDFGTAPLEQ 60 QYSTTASVSP SKTSKKHNLT MATQGGGGGR KKRRRRPKIC KNKEEAENQR MTHIAVERNR 120 RKQMNEHLSV LRSLMSESYV QRGDQASIVG GAIEFVKELE HILQSLEAKK FILLQQGHNI 180 GSDSNSGGNG CDSEVLNSTT GEALASVPAE YFPTPFAQFF SYPQYTCCQL PNKYTSKSKA 240 AIADIEVTLI ETHANVRILS RRRFRQLSKL VVAFQSLYLT VLHLNVTTLD PLVLYSISAK 300 VEEGCQLNSA DDIAGAVHHM LRIIEEEAVA TLSCQV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 95 | RKKRRRR |
2 | 90 | 95 | KKRRRR |
3 | 109 | 120 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ261233 | 1e-152 | GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352865.1 | 1e-172 | PREDICTED: transcription factor bHLH71-like | ||||
Swissprot | Q9C7T4 | 2e-72 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | M1BHA5 | 1e-170 | M1BHA5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045210 | 1e-171 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5632 | 24 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-73 | bHLH family protein |
Publications ? help Back to Top | |||
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