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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_04732.1_g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
WOX |
Protein Properties |
Length: 381aa MW: 43000.5 Da PI: 7.4282 |
Description |
WOX family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_04732.1_g00003.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 69.7 | 3.6e-22 | 77 | 136 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++
Sme2.5_04732.1_g00003.1 77 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 136
7*****************99**************************************97 PP
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2 | Wus_type_Homeobox | 115.5 | 2.6e-37 | 76 | 138 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
Sme2.5_04732.1_g00003.1 76 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 138
79***********************************************************95 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MWMMGYNDGG DFNMPDSFNG RKLRPLMPRA PHAPNATATN CFRSIHGDNF IALNHHQLAM 60 SEQNKRDFNT QQLVVSSRWN PTPEQLQTLE ELYRRGTRTP SAEQIQHITA QLRRYGKIEG 120 KNVFYWFQNH KARERQKRRR QLESAANGAG ANGAGGGDDQ SHGNCNAENS EKKEPGANRT 180 VFEMEQTKHW PSPTNCSTLA EKTAATTKAA AGVAESCRVA AERWIPFDER EQRRNLLAER 240 NATWQMMHLS CSPPNNNHIA TICSNSITTA TCTPIIRSCP STPTTMDHHQ PKQLFKAKDH 300 LNIFIEPFRS AGDQKHENIM GDDNEGHGES QTLELFPLRS SNDNNDENNF SDKDEIGAAA 360 NSNNNFSGSH YQFFEFLPLK N
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JF276253 | 0.0 | JF276253.1 Nicotiana sylvestris STENOFOLIA 1 (STF1) mRNA, complete cds. |