PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04659.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 41328.4 Da PI: 6.7443 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.4 | 1.2e-48 | 69 | 194 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 ppG+rF P+deel+v+yL+kkv ++ l+ + ikev++yk+ P++L k +ekewyfF++rd+ky++g+r+nra+ +gyWkat Sme2.5_04659.1_g00003.1 69 PPGYRFCPHDEELIVHYLRKKVMNEILPH-DRIKEVNLYKHSPQQLSeKYSMLGEKEWYFFTPRDRKYPNGDRPNRAAGTGYWKAT 153 9*************************999.88**************9444445899****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g d+++++ ++e+vg +k Lvfy+g+ pkg kt+W+mhe+r+ Sme2.5_04659.1_g00003.1 154 GADRPIMH-NNEKVGFRKALVFYQGKPPKGDKTNWIMHEFRV 194 ********.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-57 | 65 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.228 | 68 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 69 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MESDEQSKAL TSQSSKMQKI VKQKHSGDET AMVLKPNYNI NTYGKRVYVD DNINTNGKRV 60 YVDDNFVYPP GYRFCPHDEE LIVHYLRKKV MNEILPHDRI KEVNLYKHSP QQLSEKYSML 120 GEKEWYFFTP RDRKYPNGDR PNRAAGTGYW KATGADRPIM HNNEKVGFRK ALVFYQGKPP 180 KGDKTNWIMH EFRVDESRRL KAHASDMRLD DWVLCRIYKK INKLSPKGPQ KEEQERERKQ 240 EDASKSTSPV GKVEVVNCDY EGNMYSCVRQ PFELSLPQHM TDPNLYSLDN LSFYGSRLSD 300 YEMNLQSSLL SDHNIVPMSF DFNLLDPHEI MGAIESKNVL NIGDLDENSS SDEED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-58 | 69 | 220 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-58 | 69 | 220 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-58 | 69 | 220 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-58 | 69 | 220 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-58 | 69 | 220 | 21 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-58 | 69 | 220 | 21 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-58 | 69 | 220 | 21 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-58 | 69 | 220 | 21 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-58 | 69 | 220 | 21 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-58 | 69 | 220 | 21 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-58 | 69 | 220 | 21 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-58 | 69 | 220 | 21 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-58 | 69 | 220 | 18 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-58 | 69 | 220 | 18 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 2e-75 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016546854.1 | 1e-149 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | A0SPJ9 | 3e-67 | NAM2_HORVV; NAC transcription factor NAM-2 | ||||
TrEMBL | A0A1U8ESI4 | 1e-148 | A0A1U8ESI4_CAPAN; NAC domain-containing protein 72-like | ||||
STRING | XP_009759087.1 | 1e-133 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 8e-63 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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