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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_04516.1_g00005.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
WRKY |
Protein Properties |
Length: 301aa MW: 33877.8 Da PI: 6.9425 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_04516.1_g00005.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 103.5 | 1.2e-32 | 164 | 222 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDg++WrKYGqK vk+++fprsYYrCt++ C vkk+vers +dp++v++tYeg+H+h+
Sme2.5_04516.1_g00005.1 164 LDDGFRWRKYGQKAVKNAPFPRSYYRCTTTLCGVKKRVERSIQDPSIVITTYEGTHTHS 222
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010200 | Biological Process | response to chitin |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MEKENNVKRE MITPIGNGNG NGNEDENSST FLMNNPSFDI EKDYSLGFLL ETMFGTIDDY 60 TTSTTTSSIF DLLMMPLPPH HHQPPTPPAP SPSPREIITC SSVVPESSTI SSPSIELVAD 120 DYKKDGEQDH EDKYNKKLKP NKKQQKGKRE PRFAFMTKSE VDHLDDGFRW RKYGQKAVKN 180 APFPRSYYRC TTTLCGVKKR VERSIQDPSI VITTYEGTHT HSCPMTPRGY IGVQAVTTTY 240 GGARVGCGDS GGRTYNYGDS SYNSLQERRF WNSSNSSLAK DDHGLLQDMV SSRMKRDLIE 300 E
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975444 | 1e-51 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
GenBank | HG975517 | 1e-51 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |