PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04025.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 677aa    MW: 75416.8 Da    PI: 7.7263
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04025.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22110211199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g ++ p+ +ae++         ++ +   +t +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+
  Sme2.5_04025.1_g00003.1 110 FAKTLTQSDANNGGGFSAPRYCAETIfpkldltADPPVQ--IVTAKDLQGVTWNFRHIYRGTPRRHLLTSGWSTFVNKKKLVAGDS 193
                              89*********************999****997555555..7999***************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              vvF   + +++el+v+++r 
  Sme2.5_04025.1_g00003.1 194 VVFL--KAKNGELRVGIRRV 211
                              ****..559999*****985 PP
2Auxin_resp106.33.5e-35271351483
               Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               a t+++Fe+vY+Pr+st+eF v+ ++v++a+++++s+GmRfkmafetedss++++ +G v++v+ +dp++Wp+S+Wr+L+
  Sme2.5_04025.1_g00003.1 271 LAGTGQPFEIVYYPRSSTPEFFVRESSVRAAMSIQWSLGMRFKMAFETEDSSRISWfMGSVSSVQVADPIHWPHSPWRLLQ 351
                              67899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-34104216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-26106213IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-19109210No hitNo description
SMARTSM010198.6E-18110212IPR003340B3 DNA binding domain
PfamPF023622.3E-20110210IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28110212IPR003340B3 DNA binding domain
PfamPF065074.4E-30268351IPR010525Auxin response factor
PROSITE profilePS5174515.733580658IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MEGVEEKCLD SQLWHACAGS MVRIPPVNSK VYYFPQGHAE HTYSDVDFSL LPKIPAMILC  60
RVDAVKFLAD PETDEIYAKI RLIPVENKEH GFEDDTDSGV VEENEKPTSF AKTLTQSDAN  120
NGGGFSAPRY CAETIFPKLD LTADPPVQIV TAKDLQGVTW NFRHIYRGTP RRHLLTSGWS  180
TFVNKKKLVA GDSVVFLKAK NGELRVGIRR VKRGGIAGSW NSPAGGCGGF LKEDKNSMIR  240
SYSNGNLNFS GGRFRDKRNV SSDSVVNASY LAGTGQPFEI VYYPRSSTPE FFVRESSVRA  300
AMSIQWSLGM RFKMAFETED SSRISWFMGS VSSVQVADPI HWPHSPWRLL QVTWDEPDLL  360
QNVKYVNPWL VELVSNMPII DLPHLSPPRK KLCLPQELAL ERQFPLPSFS GNPLRSSSPF  420
CYPSDNTTAG IQGARHAQFG VPLLDLHLRK KSQLGVLPPR TSRPVDADSE IPNSISKVQK  480
EINENISCLL TMGTSSQMLE EADNVKKPRF LLFGQPILTE QQISSILSTY AKPQVHRDSS  540
GARLKTEKIS LGLESLSESL SSATFLWNQG CQSAELGTST DHCKVFSDSD DAGRTLDLSV  600
IGSYAELCKR LADMFEMERL DMVTRVLYLD ATGASRQLGD EPFSDFIKTA KRLTILKNPH  660
NRAARKWLTD LPILNVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-78337245388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365732.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0V0IPP80.0A0A0V0IPP8_SOLCH; Auxin response factor
STRINGPGSC0003DMT4000624890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]