PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03858.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family RAV
Protein Properties Length: 366aa    MW: 41298.8 Da    PI: 9.2024
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03858.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.5e-1459107155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Sme2.5_03858.1_g00003.1  59 SKYKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNGEEEAARAYDIAAQRFRG 107
                              89****9888.8*********3.....5*************************98 PP
2B393.41.6e-29192285184
                              EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                              f+k+ tpsdv+k++rlv+pk++ae++          g+++ +++ l +ed +g++W+++++y+++s++yvltkGW+++vk+++Lk+
  Sme2.5_03858.1_g00003.1 192 FEKAVTPSDVGKLNRLVIPKQHAERYfplggngngnGNSSSKGVLLNFEDMNGKVWRFRYSYWNSSQSYVLTKGWSRYVKEKKLKA 277
                              89*****************************999997777899******************************************* PP

                              T-EEEEEE CS
                       B3  77 gDfvvFkl 84 
                              gD+v Fk+
  Sme2.5_03858.1_g00003.1 278 GDIVSFKR 285
                              *******4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-959107IPR001471AP2/ERF domain
CDDcd000182.53E-2759114No hitNo description
SuperFamilySSF541715.36E-1859115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2060115IPR001471AP2/ERF domain
SMARTSM003802.3E-2960121IPR001471AP2/ERF domain
PROSITE profilePS5103220.46860115IPR001471AP2/ERF domain
PRINTSPR003677.1E-56172IPR001471AP2/ERF domain
PRINTSPR003677.1E-58197IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.0E-37184288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-28190286IPR015300DNA-binding pseudobarrel domain
CDDcd100172.52E-26191285No hitNo description
PfamPF023628.6E-27192286IPR003340B3 DNA binding domain
SMARTSM010198.0E-21192302IPR003340B3 DNA binding domain
PROSITE profilePS5086313.874192300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDISFIDQDQ ISSASDPLSA SPVERLRQMG SGVSIIIDAD SINCVEAESK NNNNKLPSSK  60
YKGVVPQPNG RWGAQIYEKH QRIWLGTFNG EEEAARAYDI AAQRFRGRDA VTNFKPLFDN  120
CQTEEIEISF LNSLSKAEIV DMLRKHTYND ELEHAKKVDN KNGEKRTRYT DMAAFSLDNN  180
EKVANRASEL LFEKAVTPSD VGKLNRLVIP KQHAERYFPL GGNGNGNGNS SSKGVLLNFE  240
DMNGKVWRFR YSYWNSSQSY VLTKGWSRYV KEKKLKAGDI VSFKRCTGAG VEDRQLYIDS  300
KTTGAPILDK IQVKMVRLFG VNICKVQDVS DNLVVDKNIN GGKRMREMEL LAFECSKKQR  360
VIIDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5218830910123DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366067.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-135RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLM1ABV40.0M1ABV4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000192960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-128related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]