PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WOX

Protein Properties

Length: 256aa MW: 27561.7 Da PI: 6.9457

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03616.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.3	1.8e-15	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Sme2.5_03616.1_g00007.1 22 RSRWNPKPEQILILESIFNSgMVNPPKDETVRIRKILqqfgAVGDANVFYWFQNRRSRSRR 82 89***************99************99999**************997 PP
2	Wus_type_Homeobox	107.3	8.9e-35	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri++ L+++G+++d+NVfyWFQNr++R+r++q Sme2.5_03616.1_g00007.1 21 VRSRWNPKPEQILILESIFNSGMVNPPKDETVRIRKILQQFGAVGDANVFYWFQNRRSRSRRRQ 84 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.84E-14	17	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.143	18	83	IPR001356	Homeobox domain
SMART	SM00389	1.5E-6	20	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-8	21	87	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-13	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MENEVQDSTS SNQSCERNEP VRSRWNPKPE QILILESIFN SGMVNPPKDE TVRIRKILQQ 60 FGAVGDANVF YWFQNRRSRS RRRQRQIQAS LSAASDSSGG GGKQSASSGG AIQLDSSTGN 120 FRPSLPMAAP SNYLVLGSSF SSSSSGGAVG NANDGSDGLL PFSDQMGLPK IEQNSAVTSI 180 QCSPTDNVNL HHQTGFITVF INGVATEVPR GPLDMKAMFG PGNLVLYHSS GLPVLVNEYG 240 FIVQSLQHGE SYFLVS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	7e-62	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609299.2	1e-138	PREDICTED: WUSCHEL-related homeobox 11 isoform X2
Swissprot	Q6X7J3	2e-64	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2S1B7G5	1e-137	A0A2S1B7G5_TOBAC; WOX11
STRING	XP_009609298.1	1e-135	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	5e-34	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]