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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_03353.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
WRKY |
Protein Properties |
Length: 288aa MW: 32620.6 Da PI: 6.613 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_03353.1_g00002.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 101.7 | 4.3e-32 | 147 | 203 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
+Dgy+WrKYGqK vk+s+fpr+YYrCt a+C+vkk+ver+ +dp++v +tYeg+H h
Sme2.5_03353.1_g00002.1 147 EDGYRWRKYGQKAVKNSPFPRNYYRCTNATCSVKKRVERCFSDPTIVMTTYEGKHSH 203
8*******************************************************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009624 | Biological Process | response to nematode |
GO:0009733 | Biological Process | response to auxin |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MEDNPVYSFD NYNNHSFTGL ISDYNINSSS LGFMELLGFQ DWCSSASVFE LPKEENYCPA 60 VCVPEEEVKP SAAPVDAGNV LNTPSTPNGS SISSEGHTHT TDGEVENHDQ PNTKSKQQLK 120 AKKTICQKKQ KEPRFAFMTK SEVDFLEDGY RWRKYGQKAV KNSPFPRNYY RCTNATCSVK 180 KRVERCFSDP TIVMTTYEGK HSHLSPMNTM MPRPSCYPVT PLLPSPLPMQ FNFNQSSNNL 240 TNPNLVMNNQ LEHAAFVAQG RRFCSTTEMM GDQGLDLQDL MLKQDYNR
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY229992 | 1e-126 | AY229992.1 Capsicum annuum transcription factor CaWRKY1 (WRKY1) mRNA, complete cds. |