PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03205.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 434aa    MW: 47307.6 Da    PI: 7.2855
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03205.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29201259259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg++WrKYGqK  +g+++prsYYrC+ a +Cpv+k+v+r+ ed +++++tYeg+Hnh+
  Sme2.5_03205.1_g00005.1 201 NDGCQWRKYGQKISRGNPCPRSYYRCSVApSCPVRKQVQRCLEDMSILITTYEGTHNHS 259
                              8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-31185261IPR003657WRKY domain
SuperFamilySSF1182902.75E-26192261IPR003657WRKY domain
PROSITE profilePS5081127.611195261IPR003657WRKY domain
SMARTSM007741.9E-34200260IPR003657WRKY domain
PfamPF031067.5E-26201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEKISNNSIL GATEMQNNHE EEDIKKAIKD DEFKSARAQV NEVKLENARL KLLLQQIEKD  60
YTCLQARFFN ISQSDLNKST SPTCTIEEDE SELVSLRLGR SPSPSEPKKV DKKRSMREDS  120
DDQSNDGLKL GLDYNTGVSE SDPIKPSNEP SPGPTSEAAK KVKIDDDQSV KKGAGDDEVS  180
QPNVKRARVS VRTKCDYPTI NDGCQWRKYG QKISRGNPCP RSYYRCSVAP SCPVRKQVQR  240
CLEDMSILIT TYEGTHNHSL PIEATAMAST TSAAVSMLLS GSSTSSQISK SISKTTPLYL  300
SNSSSNPLPT ITLDFTTFPT TSSFTSFNFP SNFQSGSGFL PNSLNFSSPQ SSTMPKILGS  360
GCQNYDSTST LPYHNNLTNI GSSQKQFDVN SNKLKEGSSQ QALTETLTKA IASDPSFQSV  420
VAAAISSMVG ATKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22187261174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357198.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLM1A9L50.0M1A9L5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000178590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128051921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-63WRKY DNA-binding protein 72