PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03000.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 243aa MW: 27113.9 Da PI: 6.2142

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03000.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.8	4.2e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqq Sme2.5_03000.1_g00005.1 7 PCGACKFLRRKCIKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPVSDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQ 92 7***********************89****************************************************** PP DUF260 86 qleqlkaelallkee 100 q+ +l+a+la+lke+ Sme2.5_03000.1_g00005.1 93 QVVTLQAQLASLKEQ 107 ********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.186	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRKCIK GCVFAPYFCY EQGATHFSAI HKVFGASNVS KLLAHIPVSD 60 RGEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVVTLQAQ LASLKEQAAA QNLQNGSNYI 120 ANPNYDKFQD VQSWFHHHQS ENPNIMPQFD HSSLTSNNNI GSSIPYYGSS HDENNYIMIS 180 NDHNYHMGNN YENINFVVQN KENMSSFEEG GSCSGGSSFD KQWTFQDDVD DLQSVAFRYL 240 QHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	3	101	7	104	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-145	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-145	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351689.1	1e-157	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q9SLB6	4e-65	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	M1AL26	1e-155	M1AL26_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400025142	1e-156	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8446	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	3e-58	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]