PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02876.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 680aa    MW: 75915.2 Da    PI: 5.6291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02876.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07128148425
                              ---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                              ++C ff++ G+C  GdrC+F H
  Sme2.5_02876.1_g00004.1 128 VPCIFFQQ-GFCLKGDRCPFVH 148
                              79******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1223463IPR000571Zinc finger, CCCH-type
PfamPF156632.6E-113589No hitNo description
SMARTSM003560.00233562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9536591IPR000571Zinc finger, CCCH-type
SMARTSM003560.0156790IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286124151IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5125150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6126149IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4128149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4129148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVGPTPPAQP QLQLQIQPPS TAATAMPSAE EEGLKRNTDC VYFLASPLTC KKGSECEYRH  60
SDVARLNPRD CYYWLNGSCL NPKCAFRHPP LDGVLGGQVS TPTGSSAPPV ASVAPTPNVP  120
YGSSKQGVPC IFFQQGFCLK GDRCPFVHAP MFVSNKAPPH PVPTASASTE KTNFKAFGGL  180
EKCVQEKTFF QANTWRSGES SVQTQPAEKL KAPVPKNNAS FNENVLQLKP VIDVAHQRHK  240
PKSVPPPNGN PIGRSNRVQQ PVRFDDYNSF QNKDDEISRE LSPGFDVLVD DELRGTNFYH  300
GEGQYGRNGI RNEYDIGLSA DIDQDMYHDV YGHDSHDRLP GRSGRVQHRA SSERVQGESA  360
HLERRRYVIS HDYASEKHVE DRGHQSSRRD RHYVPSHESS LPSRLRGRIK LPSRSPSPTN  420
GTDMRLDRAR DRGRLSSERP QFFSQQGRLR DRLKGRIQED LNDTGRNNSG PRMRRDASEN  480
DSNFSGPRSL AELKGRKTAE TNEQNIDEQQ VLGKRKFQKR DGYQQAGGDN VSFDGPMPLQ  540
EILKRKSSKM GMISDKSEDY QDERKDYSEP VVTSSISRNN TDLGQKEVSD PPSVVLADHQ  600
SPAHHGANEL EAEEGMVVEE ADDQDPEAEG HDLRDGDYDY EQDDGEDYNL DEGENADAGG  660
EYLEEDDEDD FAKKMGVVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465474RNNSGPRMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236893.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A0V0ITN20.0A0A0V0ITN2_SOLCH; Putative zinc finger CCCH domain-containing protein 17-like
STRINGPGSC0003DMT4000805690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633