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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_02728.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
GRAS |
Protein Properties |
Length: 433aa MW: 49218.9 Da PI: 5.7005 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_02728.1_g00002.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 308.4 | 1.6e-94 | 39 | 418 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..f 84
l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r +++ + +s+ + + +++++l +
Sme2.5_02728.1_g00002.1 39 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVCPNATNFHGSSNLE----RRLMSVTELagY 120
5799***************************************************777776655544444....34444444466* PP
GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
+++ P+++f++ + N+ I++a+eg++++Hi+Df+i++++QWp+L++a+a+Rpegpp+lRi + ++ + + ee+g+rLa+
Sme2.5_02728.1_g00002.1 121 VDLIPWHRFGFCASNSVIYKAIEGHQKIHILDFSITYCMQWPTLIDAIAKRPEGPPTLRISVPLWRPQVpplLNVSSEEVGQRLAN 206
************************************************************9955433345889999********** PP
GRAS 168 fAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqead 247
fA+ +vpfef+v+ + l++l++++L+++ +Eal+Vn++ l +l+d+++ rd +L+ vk+l+P +v++v++++d
Sme2.5_02728.1_g00002.1 207 FAKFRDVPFEFHVIedlnHDMFLSQLSPSTLQIRDDEALVVNCQNWLRYLHDDEQIKGAisSRDIFLDRVKDLNPCIVTIVDEDCD 292
*************9876434478999*******************99999876643332447************************ PP
GRAS 248 h.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
+ ns+s+ r++ +++y + fd++e+ lp++s++r +E+ +g +i+n++ eg++r+er e+ +k ++r+e+ GF +vp+se+
Sme2.5_02728.1_g00002.1 293 LvNSSSLTSRIATCFNYLWIPFDAFETFLPKDSRQRLEYEAD-IGHKIENIIGFEGNQRIERLESCNKFSQRMENNGFMSVPFSEE 377
******************************************.******************************************* PP
GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
+ k++k+ll +++ ++g++ +ee++ lvl+Wk+++ v +++W
Sme2.5_02728.1_g00002.1 378 TIKEVKSLLDEHAsGWGMK-KEEHDMLVLTWKGHNSVYATSW 418
*************666555.45677899******99999999 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 433 aa
Download sequence Send
to blast |
MRGTSTTIPH QNPSLFNNSQ STLSGALQGC IGSLDGACLE KLLLHCASAL ENNDVTLAQQ 60 VMWVLNNLAS SNGDPNQRLT SWFLRALISR ASRVCPNATN FHGSSNLERR LMSVTELAGY 120 VDLIPWHRFG FCASNSVIYK AIEGHQKIHI LDFSITYCMQ WPTLIDAIAK RPEGPPTLRI 180 SVPLWRPQVP PLLNVSSEEV GQRLANFAKF RDVPFEFHVI EDLNHDMFLS QLSPSTLQIR 240 DDEALVVNCQ NWLRYLHDDE QIKGAISSRD IFLDRVKDLN PCIVTIVDED CDLVNSSSLT 300 SRIATCFNYL WIPFDAFETF LPKDSRQRLE YEADIGHKIE NIIGFEGNQR IERLESCNKF 360 SQRMENNGFM SVPFSEETIK EVKSLLDEHA SGWGMKKEEH DMLVLTWKGH NSVYATSWVI 420 VPPPHMDMRI HDQ
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Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |