PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02641.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18954.8 Da PI: 10.2079 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H +H Sme2.5_02641.1_g00005.1 36 FECKTCNKRFSSFQALGGHRTSH 58 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00032 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg+ F L H+r+H Sme2.5_02641.1_g00005.1 79 HKCSICGMEFDLGQALGGHMRRH 101 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.11 | 36 | 58 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.12E-8 | 36 | 101 | No hit | No description |
PROSITE profile | PS50157 | 10.616 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-11 | 36 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 77 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.3E-9 | 78 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.078 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MTAMKRSRED NGQVEAEAMA NCALMLLSRV HNNNDFECKT CNKRFSSFQA LGGHRTSHSK 60 RSRLLREFLV QTNKKNKAHK CSICGMEFDL GQALGGHMRR HRDEINKIST EKKTMMIPIL 120 KKSNSSKRIF GLDLNITPND DSDNNVDDFK LWPMEAAPSP VLRIFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363364.1 | 2e-89 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 2e-33 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | M1B9D6 | 4e-88 | M1B9D6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040142 | 7e-89 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 6e-36 | C2H2 family protein |