PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_02518.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 184aa MW: 20954.5 Da PI: 5.2312 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 77.1 | 2.5e-24 | 55 | 133 | 15 | 93 |
NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 m +++P++ i++dak+++++cv ef fv + a ++cq e+ ti+++d+ w ++++ f+dy+epl++yl++y e Sme2.5_02518.1_g00010.1 55 MEMMRIFPSHVMITDDAKHIMKKCVFEFECFVICVAYEHCQYEQCTTITAEDVRWVMSNFDFDDYIEPLTLYLRRYHED 133 55889***********************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.9E-19 | 57 | 144 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.0E-9 | 57 | 111 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 7.81E-18 | 58 | 137 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MNGGLGNGRF HSYCRCPQPT PAHSPSPGNG GFHSYCRCPQ PTLAHSPFLD IELSMEMMRI 60 FPSHVMITDD AKHIMKKCVF EFECFVICVA YEHCQYEQCT TITAEDVRWV MSNFDFDDYI 120 EPLTLYLRRY HEDDDGEHDS VRREHLLKYL MVDLASGSNI TSNGDASNGR TSQCADRDVE 180 SPAK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-24 | 57 | 132 | 22 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356441.2 | 1e-47 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168329.1 | 1e-47 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168330.1 | 1e-47 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Refseq | XP_015168331.1 | 1e-47 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
TrEMBL | M1B1V0 | 3e-46 | M1B1V0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035129 | 5e-47 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-26 | nuclear factor Y, subunit B6 |