PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02406.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 179aa    MW: 20335.9 Da    PI: 10.0836
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02406.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.13.9e-3046102158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep+YVNaKQy+rIl+RRq+Rak+e ekk  +k rkpylheSRh+hAlrR+R+sgGrF
  Sme2.5_02406.1_g00005.1  46 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKDRKPYLHESRHQHALRRARASGGRF 102
                              69************************9999.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.4E-3244105IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.81545105IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-2547102IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-234870IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-2379102IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVRKDIMVSV VLRYYLVLTD YCTIQVPPHV LDMHYARMPL PQEMAQEPVY VNAKQYRRIL  60
QRRQSRAKAE LEKKQIKDRK PYLHESRHQH ALRRARASGG RFAKKTDVST GTGSVSSSGS  120
EPLQQSNAAD IQKKRESGML AELQQSYSNG SSYGNQSSFQ ESKDEYQSAE SMEGGFSGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-1946102258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141460.0BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251747.13e-88PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A1J6I1Z68e-87A0A1J6I1Z6_NICAT; Nuclear transcription factor y subunit a-1
STRINGSolyc11g065700.1.11e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-37nuclear factor Y, subunit A9