PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02309.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 726aa MW: 79843.3 Da PI: 5.8671 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7e-19 | 54 | 109 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++++++++p+ ++r+eL klgL+ qVk+WFqN+R+++k Sme2.5_02309.1_g00006.1 54 KKRYHRHTQHQIQEMEAFYKECNHPDDKQRRELGIKLGLEPLQVKFWFQNKRTQMK 109 688999***********************************************998 PP | |||||||
2 | START | 199.6 | 1.3e-62 | 243 | 464 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 ela +a++elv++a+ eep+W+ s e + ++e+ + f+++ + s+ea r+++vv+m++ +lve+l+d++ +W+ + Sme2.5_02309.1_g00006.1 243 ELAVTAMEELVRMAQTEEPLWMPTSgiistETLCEQEYARMFPRGIGpksstLSSEATRETAVVIMNHINLVEILMDVN-KWTCVF 327 57899***********************99999***********999********************************.****** PP S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS START 77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151 a ka+tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vd+S+++ ++ v R +++pSg Sme2.5_02309.1_g00006.1 328 AgivsKAMTLEVLSTGvagnhnGALQVMTAEFQVPSPLVPtRENYFVRYCKQHAEGTWAVVDISLENLRSTA----VSRYRRRPSG 409 *********************************************************************987....677888**** PP EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +lie+++ng+s+vtwvehv++++r +h ++++lv+sg+a+gak+wvatl+rqce+ Sme2.5_02309.1_g00006.1 410 CLIEELQNGYSRVTWVEHVEVDERAVHDIYKPLVNSGIAFGAKRWVATLNRQCER 464 *****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 31 | 109 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.38E-18 | 39 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.24 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-17 | 52 | 115 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-16 | 54 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-16 | 54 | 112 | No hit | No description |
PROSITE profile | PS50848 | 46.093 | 234 | 467 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.46E-34 | 235 | 466 | No hit | No description |
CDD | cd08875 | 5.55E-120 | 238 | 463 | No hit | No description |
SMART | SM00234 | 2.8E-59 | 243 | 464 | IPR002913 | START domain |
Pfam | PF01852 | 7.4E-53 | 244 | 464 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.8E-5 | 313 | 464 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.86E-25 | 482 | 717 | No hit | No description |
PROSITE profile | PS50848 | 10.171 | 513 | 586 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MFNSQHQLLD MSSSAQRTPE NELDFLRDES GNENMEAPNS GDDQADPNQP PNKKKRYHRH 60 TQHQIQEMEA FYKECNHPDD KQRRELGIKL GLEPLQVKFW FQNKRTQMKA QHERSENAQL 120 RNENEKLRAE NSRYKEALNN AICPNCGGPA SVGEMSFDEQ HLRIENARLR DEIDRITGVA 180 GGYVGKSSLN FPPHQLPPPE APRCMDVAFG PQSSLHGEMF PSGDLLRMTA VGLTDAEKPM 240 VIELAVTAME ELVRMAQTEE PLWMPTSGII STETLCEQEY ARMFPRGIGP KSSTLSSEAT 300 RETAVVIMNH INLVEILMDV NKWTCVFAGI VSKAMTLEVL STGVAGNHNG ALQVMTAEFQ 360 VPSPLVPTRE NYFVRYCKQH AEGTWAVVDI SLENLRSTAV SRYRRRPSGC LIEELQNGYS 420 RVTWVEHVEV DERAVHDIYK PLVNSGIAFG AKRWVATLNR QCERLASAMA NNVSTGDTDL 480 LSNPAGRKSM LKLAERMVTS FCAGVGSSTA HVWTVLSGSG SDDVRVMTRK SVADPGRPAG 540 IVLSAATSFW LPVSPRRVFD FLRDENSRSQ WDILSNGGIV QEMSHIANGR DPGNCVSLLR 600 VNSGTNFNQS NMLILQESVT DPTGSYVIYA PVDTTAMNLV LSGGDPDYAA LLPSGFAILP 660 DGPMNHDGGN SEIGPVGGSL LTVAFQILVD SVPTAKLSLG SIATVNSLIK CTVKKIKEAV 720 TSENAP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348085.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Refseq | XP_015164555.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | M0ZPP8 | 0.0 | M0ZPP8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400005277 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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