PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02033.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79776.4 Da    PI: 5.6296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02033.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-1963118156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t+ q++e+e++F+++++p+ ++r+eL k+lgL+  qVk+WFqN+R+++k
  Sme2.5_02033.1_g00001.1  63 KKRYHRHTQLQITEMESFFKECPHPDDKQRKELGKRLGLEPLQVKFWFQNKRTQMK 118
                              688999***********************************************998 PP
2START213.57.3e-672524741206
                              HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                    START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                              ela +a++elv++a+ +ep+W + +      e + ++e++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ 
  Sme2.5_02033.1_g00001.1 252 ELAVAAMEELVRMAQTGEPLWITGPgpdnstETLCEEEYIRTFPRGIGpkslgLTTEASRESAVVIMNHINLVEILMDVN-QWTNV 336
                              57899**********************99999999**********999********************************.***** PP

                              -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                    START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150
                              +a    +a tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++ + +g+w++vdvS+d+ ++ +    v R++++pS
  Sme2.5_02033.1_g00001.1 337 FAglvsRALTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHADGTWAVVDVSLDNLRPTS----VSRGRRRPS 418
                              **********************************************************************975....8******** PP

                              EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              g+li++++ng+skvtw+ehv++++r +h+++r+lv+sgla+gak+wvatl+rqce+
  Sme2.5_02033.1_g00001.1 419 GCLIQELPNGYSKVTWIEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 474
                              ******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-2145118IPR009057Homeodomain-like
SuperFamilySSF466893.55E-1847120IPR009057Homeodomain-like
PROSITE profilePS5007116.14760120IPR001356Homeobox domain
SMARTSM003897.9E-1761124IPR001356Homeobox domain
PfamPF000461.8E-1663118IPR001356Homeobox domain
CDDcd000865.96E-1763121No hitNo description
PROSITE profilePS5084845.578243477IPR002913START domain
SuperFamilySSF559618.25E-37244476No hitNo description
CDDcd088759.77E-128247473No hitNo description
SMARTSM002343.9E-67252474IPR002913START domain
PfamPF018521.5E-56253474IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-7351474IPR023393START-like domain
SuperFamilySSF559611.19E-27494720No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MFQPNMFESH HHLLDMSHKS PENDLDLIRD NDEFESKSMA DIMENNPSGD DQEVDPNQRP  60
NKKKRYHRHT QLQITEMESF FKECPHPDDK QRKELGKRLG LEPLQVKFWF QNKRTQMKAQ  120
HERHENSELR AENEKLRADN IRYKEALSNA TCPNCGGPAS IGEMSFDEQH LRIENARLRE  180
EIDRISGIAA KYVGKPILTY PNLPTTGPAR SLDLGVGSFG PQTGLVGEMY SAGDLLRSVS  240
GPIDADKPMI IELAVAAMEE LVRMAQTGEP LWITGPGPDN STETLCEEEY IRTFPRGIGP  300
KSLGLTTEAS RESAVVIMNH INLVEILMDV NQWTNVFAGL VSRALTLEVL STGVAGNYNG  360
ALQVMTAEFQ VPSPLVPTRE NYFVRYCKHH ADGTWAVVDV SLDNLRPTSV SRGRRRPSGC  420
LIQELPNGYS KVTWIEHVEV DDRAVHNIYR PLVNSGLAFG AKRWVATLDR QCERLASAMA  480
NNIPTGDIGV ITSPEGRKSM LKLAERMVMS FCAGVGASTA HTWTTLSGSG ADDIRVMTRK  540
SIDDPGRPPG IVLSAATSFW LPVPPKRVFD FLRDENSRSE WDILSNGGLV QEMAHIANGH  600
DPGNCVSLLR VNSGNSSQSN MLILQESTTD STGSYVIYAP VDIVAMNVVL SGGDPDYVAL  660
LPSGFAILPD GGGGINVGTG GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIKCTVERIK  720
TAVACDSA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343296.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_015162427.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A0V0IVG00.0A0A0V0IVG0_SOLCH; Putative homeobox-leucine zipper protein MERISTEM L1-like
STRINGXP_009799795.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]