PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_01867.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 215aa MW: 24205.2 Da PI: 5.7128 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 124.9 | 3.1e-39 | 47 | 140 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 reqd+f+Pi+nv+rim+k+lP +aki +d+k ++qecvsefisf+t+ea+d+c+r++ kti+++d++ a+++ Gf d +epl++yl Sme2.5_01867.1_g00005.1 47 REQDQFIPITNVIRIMHKILPLHAKIDDDSKISIQECVSEFISFITCEANDHCHRDQCKTITTEDVIQAMSNHGFADNIEPLTLYL 132 89************************************************************************************ PP NF-YB 88 kkyreleg 95 + y +g Sme2.5_01867.1_g00005.1 133 HCYCAYDG 140 **987665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-37 | 40 | 149 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.23E-26 | 49 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-19 | 52 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.6E-6 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 2.6E-6 | 99 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MEDFRTRSTQ PTAACSLSPA TETKRELPAQ LYQAIAANGQ NSECTIREQD QFIPITNVIR 60 IMHKILPLHA KIDDDSKISI QECVSEFISF ITCEANDHCH RDQCKTITTE DVIQAMSNHG 120 FADNIEPLTL YLHCYCAYDG GKRESTRRKP LLLKHPIVHL PTNFQMAHHQ YGYFVFPQVI 180 CHGCMQGDAS NVSTSQYAAV DVDSEVESPA KESNE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-42 | 41 | 135 | 1 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168332.1 | 3e-76 | PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1 | ||||
Refseq | XP_015168333.1 | 3e-76 | PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1 | ||||
TrEMBL | M1B1U5 | 2e-68 | M1B1U5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc10g009440.2.1 | 7e-69 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400035117 | 4e-69 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-47 | nuclear factor Y, subunit B6 |