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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_01860.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
RAV |
Protein Properties |
Length: 349aa MW: 40477.1 Da PI: 5.6489 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_01860.1_g00006.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 31.2 | 5.3e-10 | 47 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s++kGV +g W A+I+ + +r++lg+f t+ eAa a++ a+ +l g
Sme2.5_01860.1_g00006.1 47 SRFKGVV-GQHNGHWGAQIYA------NhQRIWLGTFKTEMEAAMAYDSAAIRLLG 95
6899996.4448******999......44**********77************987 PP
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2 | B3 | 91.4 | 6.7e-29 | 171 | 254 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+ltpsdv+k++rlv+pkk+a+++ + ++ +++++d+s r W+++++y+k+s+++v+tkGW++Fvk++gL+++D+v F l
Sme2.5_01860.1_g00006.1 171 FQKELTPSDVGKLNRLVIPKKYATKYfpQ---IQDEEMIFYDTSKRLWKFRYCYWKSSQSFVFTKGWNRFVKDKGLRAKDTVAFNL 253
99************************633...35668***********************************************97 PP
- CS
B3 85 d 85
Sme2.5_01860.1_g00006.1 254 C 254
5 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MEDETNLISS TTTYLTVGDC DSSASNHLLP KKRNFHAREG KTCIPGSRFK GVVGQHNGHW 60 GAQIYANHQR IWLGTFKTEM EAAMAYDSAA IRLLGQDHSH RNLAWTNSTI QEPNFQTQFS 120 TEDILRMIKE GSYTSKFDEY LKEKFEDHFQ SLENLQTVAK GNAEFSYKQL FQKELTPSDV 180 GKLNRLVIPK KYATKYFPQI QDEEMIFYDT SKRLWKFRYC YWKSSQSFVF TKGWNRFVKD 240 KGLRAKDTVA FNLCEFKNGT KENCNAFVID VVKNTEVLSI NLALNHEETS NEHEMETQEF 300 RKAQPYDDDD DDNNNNDEGE DDDDASLVPV WLFGKQIGWT EAKKAMEFK
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975442 | 1e-176 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |