 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_01689.1_g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
WRKY |
| Protein Properties |
Length: 332aa MW: 36600.1 Da PI: 4.9361 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_01689.1_g00004.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 98.8 | 3.4e-31 | 154 | 212 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
Sme2.5_01689.1_g00004.1 154 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 212
79************************9988****************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MEEDWDLHAV VRGCAASSTA AATSTTTTTS TAAATNSCCN FQPRQDGNFF NFQDPFVPRF 60
DNPTTDFEEL HNLYKPFFPK SQQIPLSPQN NNNNIPISPL SVLGGLQDLS PQQTLKQQQH 120
IHQLNSTRPT QPKQSPLKNQ LKKVCQVPAE GLSSDMWSWR KYGQKPIKGS PYPRGYYRCS 180
TSKGCLARKQ VERNRSDPNM FIVTYTAEHN HPMPTHRNSL AGSTRQKPAN SEAGTVSDSN 240
KPSSSSPVSS PATEKQESSR EEKEDIFEDD DDEFGSSNMG LDNMEPADDD FFEGLDELAA 300
QATGDCFSDN FPGSMQLTWL SNNATTTAAG GV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975513 | 1e-178 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
