PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01622.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 192aa MW: 22416.3 Da PI: 4.8571 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.9 | 1.8e-12 | 50 | 110 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +lk+ rr ++NR++A+r R ++ ++i+eLe+k+k L+ + L+ke+e+ k++ k+ e+ Sme2.5_01622.1_g00004.1 50 DLKKFRRTMSNRLSAQRTRMKRTEYIAELEKKAKDLQDTVTLLRKEVENVKDNKHKMLLEN 110 689*************************************************999998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-11 | 48 | 112 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.99 | 50 | 102 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-11 | 51 | 110 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.7E-10 | 51 | 105 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-11 | 52 | 106 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 55 | 70 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MKEKRKRSDE PDLNLSVKAP VEHESVNRFP TLEEAVNFEL ENGKVDPNVD LKKFRRTMSN 60 RLSAQRTRMK RTEYIAELEK KAKDLQDTVT LLRKEVENVK DNKHKMLLEN QILQHQLQII 120 TYNSNMRTAQ TEELKAELQM LKELAMAQNG EENVEIEGEI SNSIDFESIE KIDQYLNLDA 180 IDFSPPKNND DI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 70 | RTRMKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165679.1 | 3e-67 | PREDICTED: transcription factor VIP1-like | ||||
TrEMBL | M1DJC4 | 1e-67 | M1DJC4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089985 | 2e-68 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7615 | 19 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.1 | 4e-11 | bZIP family protein |