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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_01585.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
WRKY |
Protein Properties |
Length: 499aa MW: 55488.7 Da PI: 7.8474 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_01585.1_g00006.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 106.5 | 1.3e-33 | 171 | 228 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k
Sme2.5_01585.1_g00006.1 171 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 228
8****************************************.***************85 PP
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2 | WRKY | 105.9 | 2.1e-33 | 341 | 399 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
Sme2.5_01585.1_g00006.1 341 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASQDIRSVITTYEGKHNHD 399
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 499 aa
Download sequence Send
to blast |
MAASSFSFPT SSSFMNTSFT DLLASDDYPT KGLADRIAER TGSGVPKFKS LPPPSLPLSP 60 PPFSPSSYFA IPPGLSPTEL LDSPVLLSSS NLLPSPTTGT FPAQAFNWKS SSHQHVKQED 120 KNCSDFSFQT QVGTAASISQ SQTNHVSLNN NNQNNSGNQY NQCIREQKRS DDGYNWRKYG 180 QKQVKGSENP RSYYKCTYPN CPTKKKVERS LDGQITEIVY KGNHNHPKPQ STRRSSSSTA 240 SSAIQSYNTQ TNEIPDHQSY GSQMDSVATP ENSSISFGDD DHEHTSQKSS RSRGDDLDEE 300 EPDSKRWKRE SESEGLSVLG GSRTVREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN 360 PRSYYKCTST GCPVRKHVER ASQDIRSVIT TYEGKHNHDV PAARGSGNHS INRPVVPTIR 420 PSVTSHQSNY QVPLQSIRPQ QSEMGAPFTL EMLQKPNDYG FSGYANSEDS YGNQVQDNNV 480 FSRAKNEPRD DMFMESLLC
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Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB192884 | 0.0 | AB192884.2 Solanum tuberosum PPS8 mRNA for double WRKY type transfactor, complete cds. |