PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01553.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | SRS | ||||||||
Protein Properties | Length: 341aa MW: 36598.3 Da PI: 7.0695 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 222.5 | 8.5e-69 | 113 | 268 | 3 | 155 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskk 82 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thv+stWvpaakrrerqqql+++++++++++ +++++kr+r + + Sme2.5_01553.1_g00006.1 113 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCHTHVRSTWVPAAKRRERQQQLSTLQQQQEEEQqqqqqqHRDNPKRQR--EDPS 196 5789**************************************************99988877666333222222222222..3355 PP DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 +s+l +t++ + s++ le+ ++P++v s+avf+cvr+ssvdd+e+++aYqt+v+igGhvfkGiLydqG+e++ Sme2.5_01553.1_g00006.1 197 ASSLVCTRILPS-STSGLEVGNFPAKVTSNAVFHCVRMSSVDDAEDQFAYQTVVNIGGHVFKGILYDQGPENQ 268 667777777665.456899999************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.8E-67 | 115 | 266 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.0E-26 | 117 | 159 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.9E-27 | 218 | 265 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MAGFFSLGGG AGSSSQDQQE TTNNPPTQIA PESNWFLYRN DHQELPTSYR GFELWQTSNS 60 QPQIRNPLQD LYPTAAVGLG IGPSHSGFTT VARPDHDPPS VGGSGLVMMR SAGGGISCQD 120 CGNQAKKDCQ HMRCRTCCKS RGFQCHTHVR STWVPAAKRR ERQQQLSTLQ QQQEEEQQQQ 180 QQQHRDNPKR QREDPSASSL VCTRILPSST SGLEVGNFPA KVTSNAVFHC VRMSSVDDAE 240 DQFAYQTVVN IGGHVFKGIL YDQGPENQYM AAGESSSGGG SASHQHNLIG AAGTATSAAT 300 SGRGGGAAAA PETSPYLDPS LYPAPLNALM AGTQFFPPPR S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC331912 | 0.0 | KC331912.1 Solanum lycopersicum expression of terpenoids 3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340684.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | K4B6C9 | 1e-118 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A0V0IDY8 | 0.0 | A0A0V0IDY8_SOLCH; Uncharacterized protein | ||||
STRING | PGSC0003DMT400009307 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-73 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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