PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01363.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 1057aa    MW: 118561 Da    PI: 8.5649
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01363.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.3e-09153192548
                      AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                              GVr  k +g++ A I d    + ++k+++lg+f+t eeA +a+  
  Sme2.5_01363.1_g00002.1 153 GVRKQK-NGKYGAVITD----KiRHKQVWLGTFDTIEEASQAYYS 192
                              9**888.8*********....4345*****************965 PP
2AP231.54.5e-10295339553
                      AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                              GVr+ k +gr+ A I d    + ++k+++lg+f+t eeA +a+   + ++
  Sme2.5_01363.1_g00002.1 295 GVRRQK-TGRYGAVITD----KiRHKKVWLGTFDTIEEASQAYFSKKSEF 339
                              9**888.9*********....4345*****************98776665 PP
3AP233.51e-10438484555
                      AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              GVr+ k +gr+ A I d +   k+k+++lg+f+t eeA +a+   + +le+
  Sme2.5_01363.1_g00002.1 438 GVRRQK-NGRYGAVITDTT---KHKQVWLGTFDTVEEASQAYFSKKSELEN 484
                              9**888.8*********42...35******************999998887 PP
4AP234.26.2e-11587636356
                      AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              ++G+r+ k +g++ A Ird       r k+++lg+f+t e+A +a+   + +le+e
  Sme2.5_01363.1_g00002.1 587 VPGIRRQK-NGKYGAVIRDtT-----RhKQVWLGTFDTVEQASQAYFSKKSELENE 636
                              78***888.8*********33.....35******************9999999886 PP
5AP231.44.7e-10740786454
                      AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                              +G+r+ k +gr+ A I+d       + k+++lg+f+t eeA +a+   + +l+
  Sme2.5_01363.1_g00002.1 740 TGIRRQK-SGRYGAVIKDrI-----NhKTVWLGTFDTVEEASQAYLSKKSELK 786
                              69*9888.8*********33.....45******************98887776 PP
6AP233.69.4e-11847885546
                      AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 
                              GV+ +k +g++ +eIr p    ++ kr++lg+fgtaeeA +a+
  Sme2.5_01363.1_g00002.1 847 GVHKRKDSGKYTSEIRNP----ISkKRVWLGTFGTAEEAWRAH 885
                              9****************7....246**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.983150207IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-9152197IPR016177DNA-binding domain
PfamPF008473.0E-5152199IPR001471AP2/ERF domain
CDDcd000185.97E-12153190No hitNo description
SMARTSM003808.6E-5153216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-10153195IPR001471AP2/ERF domain
PROSITE profilePS5103212.405292352IPR001471AP2/ERF domain
SMARTSM003802.4E-4292358IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-9294337IPR016177DNA-binding domain
CDDcd000185.83E-11295332No hitNo description
Gene3DG3DSA:3.30.730.106.8E-10295332IPR001471AP2/ERF domain
PfamPF008477.4E-6295341IPR001471AP2/ERF domain
PROSITE profilePS5103211.772435497IPR001471AP2/ERF domain
SMARTSM003803.7E-6435496IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-10436482IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-11438488IPR001471AP2/ERF domain
CDDcd000182.34E-12438475No hitNo description
PfamPF008475.3E-6438484IPR001471AP2/ERF domain
PROSITE profilePS5103211.878586645IPR001471AP2/ERF domain
PfamPF008471.3E-5587636IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-9588633IPR016177DNA-binding domain
CDDcd000183.66E-11589626No hitNo description
SMARTSM003808.0E-5589643IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-11589629IPR001471AP2/ERF domain
PROSITE profilePS5103211.851738795IPR001471AP2/ERF domain
SMARTSM003801.9E-4738795IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-9740780IPR001471AP2/ERF domain
PfamPF008473.5E-5740786IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-9740786IPR016177DNA-binding domain
CDDcd000184.34E-11741778No hitNo description
CDDcd000181.97E-12843885No hitNo description
PROSITE profilePS5103214.104844906IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-11844892IPR016177DNA-binding domain
SMARTSM003806.1E-6844899IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-13844892IPR001471AP2/ERF domain
PfamPF008474.2E-5847885IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1057 aa     Download sequence    Send to blast
MGTDQRGLLA DEKEEEISNK KQKINQINQT EIYVDKVKST VPLQHTNVAT ERSKEEAHGK  60
IPFTKEIKLH EKRPLFVNEL QNMGTYHSVG EKEAFLGTEE SKGFNSNMHK FQEKEPLICI  120
ESTSKETSCS MSNVHGDTET SDECNKAKIS LIGVRKQKNG KYGAVITDKI RHKQVWLGTF  180
DTIEEASQAY YSKKSEFEKL SQQSNKDNEP KENLDQIQQL GSTVTSLSVG NDQTKDTASV  240
SKINSLEVHK NNWSRKEPES SEATICLMAN VNDTESSNEC NTSTSNPKDK VRLLGVRRQK  300
TGRYGAVITD KIRHKKVWLG TFDTIEEASQ AYFSKKSEFE KLSQQGDKGN KPKENLDQIQ  360
QLELPTVTSL SVGNDQTKDT ASVSKINSLE VHKNNWSGKE PESSEETIHL MANVNGTESS  420
NECNTSTSIP KDKTHLLGVR RQKNGRYGAV ITDTTKHKQV WLGTFDTVEE ASQAYFSKKS  480
ELENAKLNQQ RNKENRPKKN CDQIQQPGSP IVLADGPTLD TASVGMRNET IDFHRTHIIG  540
VHKSKTAEKE PESSKETSCL MANVHGTESS NECHTTNVGN PKAKRNVPGI RRQKNGKYGA  600
VIRDTTRHKQ VWLGTFDTVE QASQAYFSKK SELENEKLNQ KGNKEKCDKL QQPESPVVAS  660
LSVANDQTLN AASIGRRNKR IDSYKATTHI VGVHKNKMSG KEPESSKETA RPMDNVHGAE  720
SGDECNTTKS CDPKAKISLT GIRRQKSGRY GAVIKDRINH KTVWLGTFDT VEEASQAYLS  780
KKSELKNLGR QSNKESKPKK TCDQFEQSNS PIVASSSVAN HDQTLNTDQV RRRNKRIDSH  840
KKTHFFGVHK RKDSGKYTSE IRNPISKKRV WLGTFGTAEE AWRAHQSKKI EFQRLVEATQ  900
QCGNEQTPTQ DEKSEKLVNV KSGNENANCE PKSAEIDVPI SNSSNDGTEQ RIDSHEIGTA  960
EEAFRAYQSK RFDLQSSKEV ELQRDMPTDS SAREKQEGQE NYEDLRMGEW VQLPGNRAVK  1020
FSLKLGLPII DNYGSLLGEF STLDDLSICK TEDGNET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291299RLLGVRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566296.10.0PREDICTED: uncharacterized protein LOC107864446
TrEMBLM1AW610.0M1AW61_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000317510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-11ERF domain protein 10