PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01286.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 298aa MW: 33023.7 Da PI: 8.8308 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.6e-11 | 84 | 127 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR++++s fe+L llP++ K +K++i+ Av +I+ Lq Sme2.5_01286.1_g00009.1 84 TERERRKKMRSLFENLHGLLPQL----PAKADKSTIVDAAVTHIRALQ 127 6*********************6....39******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.951 | 76 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-13 | 78 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-12 | 81 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.62E-11 | 81 | 128 | No hit | No description |
Pfam | PF00010 | 1.9E-8 | 84 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-4 | 84 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.39E-4 | 223 | 265 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MSGVAENIHN MSWESIFNLN DQLLRSKEKF EGDKLPDSNR SDTCPPLTTV QATRDAGKKI 60 MTSPDPKKGG NKSGAKEHEI HIWTERERRK KMRSLFENLH GLLPQLPAKA DKSTIVDAAV 120 THIRALQHTF NNLQNQKIER LQLGMMRLST MMTTQKYPSV GTSWEQFLAD QGSTSNSAAI 180 TPTNNNNMSA TPLLMNNNNV PTFFESWCSP NVTINVCGAV AHISVCCPKK PGLFTLICFV 240 LEKHNIEVVS AQIQSDPVRT MFMIQAQAKG RGGLAQGFSV GEMYKQVASE ILSITTSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015163699.1 | 1e-108 | PREDICTED: transcription factor bHLH95-like | ||||
TrEMBL | M1CF93 | 1e-107 | M1CF93_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066257 | 1e-108 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 8e-47 | bHLH family protein |