PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01146.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 547aa MW: 60787.2 Da PI: 5.3895 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.7 | 6e-13 | 234 | 290 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++t+e+Aa+a++ a++k++g Sme2.5_01146.1_g00013.1 234 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 290 78*******************333.44555535555.77******************98 PP | |||||||
2 | AP2 | 46.5 | 8.9e-15 | 335 | 384 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sme2.5_01146.1_g00013.1 335 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 384 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-15 | 234 | 300 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-10 | 234 | 290 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.75E-20 | 234 | 298 | No hit | No description |
SMART | SM00380 | 8.0E-24 | 235 | 304 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-13 | 235 | 299 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.149 | 235 | 298 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 236 | 247 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.91E-25 | 333 | 394 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 333 | 394 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-34 | 334 | 398 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 334 | 392 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 334 | 392 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 335 | 384 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 374 | 394 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MSNWLGFSLT PDFRIDNEDE DEEEEVKNYE RRNEAAENTP LSVMPLSSDG SLCMMDPLPT 60 EDCWRYENTA NNPEEEGPKL EDFLGCCYSN SPPNDGEQQI AEINVNIPPS INQSDHEQHQ 120 LEIGANMKLI PSPQMMVQNS QFQSSHEFAN STGSVYHLPF DGATSVSGFK SWLRQASAAA 180 PPMSSAEEII NPSNCQALSL AAAPKKRPVA VENISGSKES VPRKSIDTFG QRTSQYRGVT 240 RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDTEEKAARA YDLAALKYWG PNTHINFPLN 300 TYEKELEEMK NMNRQEFVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL 360 YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLIAG DLAKRSPSKD 420 SVVCPSSYED YNSCTTSPQP ILAMTNGEQL QQPVDSFMEM VPLMGAAGSS SRSSSNAPSP 480 KCAGSGEMSC DFGVGLEYPQ AYYSSVQVQN HKFEDGRKGN DDNSSSSGRI GNMDLVHPVP 540 MFALWNQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342914.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-138 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A3Q7GM43 | 0.0 | A0A3Q7GM43_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g123430.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-127 | AP2 family protein |
Publications ? help Back to Top | |||
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