PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01146.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 547aa    MW: 60787.2 Da    PI: 5.3895
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01146.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76e-13234290155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++t+e+Aa+a++ a++k++g
  Sme2.5_01146.1_g00013.1 234 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 290
                              78*******************333.44555535555.77******************98 PP
2AP246.58.9e-15335384355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sme2.5_01146.1_g00013.1 335 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 384
                              9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-15234300IPR016177DNA-binding domain
PfamPF008473.5E-10234290IPR001471AP2/ERF domain
CDDcd000182.75E-20234298No hitNo description
SMARTSM003808.0E-24235304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-13235299IPR001471AP2/ERF domain
PROSITE profilePS5103218.149235298IPR001471AP2/ERF domain
PRINTSPR003671.2E-6236247IPR001471AP2/ERF domain
CDDcd000181.91E-25333394No hitNo description
SuperFamilySSF541719.15E-18333394IPR016177DNA-binding domain
SMARTSM003802.1E-34334398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18334392IPR001471AP2/ERF domain
PROSITE profilePS5103219.137334392IPR001471AP2/ERF domain
PfamPF008471.7E-9335384IPR001471AP2/ERF domain
PRINTSPR003671.2E-6374394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSNWLGFSLT PDFRIDNEDE DEEEEVKNYE RRNEAAENTP LSVMPLSSDG SLCMMDPLPT  60
EDCWRYENTA NNPEEEGPKL EDFLGCCYSN SPPNDGEQQI AEINVNIPPS INQSDHEQHQ  120
LEIGANMKLI PSPQMMVQNS QFQSSHEFAN STGSVYHLPF DGATSVSGFK SWLRQASAAA  180
PPMSSAEEII NPSNCQALSL AAAPKKRPVA VENISGSKES VPRKSIDTFG QRTSQYRGVT  240
RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDTEEKAARA YDLAALKYWG PNTHINFPLN  300
TYEKELEEMK NMNRQEFVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL  360
YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLIAG DLAKRSPSKD  420
SVVCPSSYED YNSCTTSPQP ILAMTNGEQL QQPVDSFMEM VPLMGAAGSS SRSSSNAPSP  480
KCAGSGEMSC DFGVGLEYPQ AYYSSVQVQN HKFEDGRKGN DDNSSSSGRI GNMDLVHPVP  540
MFALWNQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342914.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A3Q7GM430.0A0A3Q7GM43_SOLLC; Uncharacterized protein
STRINGSolyc03g123430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-127AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]