![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00924.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 644aa MW: 70766.6 Da PI: 7.4144 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.6 | 1.3e-12 | 301 | 357 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a+++a++k++g Sme2.5_00924.1_g00001.1 301 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 357 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 46.1 | 1.2e-14 | 400 | 451 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sme2.5_00924.1_g00001.1 400 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 451 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.51E-19 | 301 | 365 | No hit | No description |
Pfam | PF00847 | 1.3E-9 | 301 | 357 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-14 | 301 | 367 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.8E-23 | 302 | 371 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.069 | 302 | 365 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-13 | 302 | 366 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 303 | 314 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 400 | 461 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-10 | 400 | 451 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.81E-26 | 400 | 461 | No hit | No description |
SMART | SM00380 | 1.1E-34 | 401 | 465 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 401 | 459 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 401 | 459 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 441 | 461 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 644 aa Download sequence Send to blast |
MKMKSMNDDN NNSSSNNSSN NHNSTAAANS NWLGFSLSPH MKMEVTNSSE TQHQHQFAQS 60 FYLSASPPPM NVSTTSALCY ENNPFHSSLS VMPLKSDGSL CIMEALSRSH ADAMVQCSSP 120 KLEDFLGGAT MGASQYGSHD REAMALSLDS LYYHQNEEEI QVHSHHPYYS PMHYHGMYNQ 180 ESLLEEAKPT QISNCDAQMT GNELKSWGHY AVDQHINATC SMVAAAATSA GGGGTVGCND 240 LQSLSLSMNP GSQSSCVSPR QISPTGLECV AIESKKRASG KVAQKQPVHR KSIDTFGQRT 300 SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM EEKAARAYDQ AALKYWGPST 360 HINFPLENYQ KELDDMKNMT RQEYVAHLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR 420 VAGNKDLYLG TFSTQEEAAE AYDVAAIKFR GVNAVTNFDI SRYDVEKIMA SNTLPAGELA 480 RRTKEIEPLE SIEYNNIGGG GQKIEECVQN DNNNGNIPDW KMVLYQTSNP SFRNPTFSMA 540 LQGLIGVDSM NNSSNHATIL DHEQNKIGNH FSNPSSLVTS LGSSREASPD KSATATASLV 600 FAKPTKFVVP SVASSVNACI PSAQLRPMPV SMAHLPVFAA LNDA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB181203 | 0.0 | AB181203.1 Solanum lycopersicum LeANT mRNA for AINTEGUMENTA homolog, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356836.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Refseq | XP_006356837.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-160 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | M1A1H2 | 0.0 | M1A1H2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012588 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-137 | AP2 family protein |