PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 201aa MW: 21714.9 Da PI: 10.4374

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00766.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	38	76	9	47
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Sme2.5_00766.1_g00005.1 38 NRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 76 568899999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.32E-11	37	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-6	37	75	IPR009057	Homeodomain-like
CDD	cd00167	5.26E-6	37	77	No hit	No description
TIGRFAMs	TIGR01557	7.1E-12	37	79	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-6	38	76	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MIIRFGFLQE DNCIESIGAK TVELTINLIV LYLRGFENRL FLLGLDKYGK GDWRSISRNF 60 VVTRTPTQVA SHAQKYFIRL NSMNRDRRRS SIHDITSVNT GEVSVPQGLI TGQTNCSAAG 120 NSSSKQSKQQ TPLPAAPPGV SIYGATSIGQ PIGGPFVSAV GTPVNVPPPT HMAYGVRPPI 180 PGAVVPGAPM TYPMPHTSMH R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613368.1	2e-98	PREDICTED: transcription factor DIVARICATA
Swissprot	Q9FNN6	6e-64	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2G3D294	6e-97	A0A2G3D294_CAPCH; Protein RADIALIS-like 6
STRING	XP_009613368.1	7e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4149	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-59	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]