PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00727.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 499aa MW: 54663.8 Da PI: 5.7384 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.1 | 1.9e-33 | 227 | 281 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe Fveav++LGGsekAtPk +l+lm+v++Lt++hvkSHLQkYR+ Sme2.5_00727.1_g00005.1 227 KPRMRWTPELHEVFVEAVNKLGGSEKATPKGVLKLMNVESLTIYHVKSHLQKYRT 281 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.351 | 224 | 284 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-18 | 225 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-31 | 225 | 283 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-25 | 227 | 281 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-9 | 229 | 280 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.8E-8 | 314 | 335 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MDVSGAMPMS LPSLPKLEEK FPKLPDSVHV ISEKELTTNL TFPRAVSSMS KSGTVGHLLS 60 STSGHHKDFH FSPPSSQETR TCHYPFISSG ASIAASQASK LSVHSTSLDN YPLGSNPKSW 120 GKDSFHEFLS FPTNVPVENG QVESLAGVLA SDDHAKRSDW QEWADQLIND DDTLGSSWND 180 ILVDINFPDP EPKLLGGSEI PANQLQPPPP TAGQSCPVGS PSSAASKPRM RWTPELHEVF 240 VEAVNKLGGS EKATPKGVLK LMNVESLTIY HVKSHLQKYR TARYKPESSE GTSERKPTVV 300 AEMPSLDLKT TKGITEALKM QMEVQKQLHE QLEEQSYSGQ SGSGLPSGQD EGGELRWFRH 360 VKRRCTDAPM RKCERSTENA DGSAETASCM RIEEQGKYLQ MMFEKTKNMG KELSVSSSKS 420 DEPPSPFTAP PDDKSDAPEQ DHVSIELSSN VASSSANVLT ENKEQKSPER KACEDHDSDG 480 RDLRFPPAKR AKSEETSPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-29 | 227 | 285 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-29 | 227 | 285 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-29 | 227 | 285 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-29 | 227 | 285 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-29 | 227 | 285 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-29 | 227 | 285 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-29 | 227 | 285 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-29 | 227 | 285 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-179 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340463.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A0V0ICE0 | 0.0 | A0A0V0ICE0_SOLCH; Uncharacterized protein | ||||
STRING | XP_009593796.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4582 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 2e-68 | phosphate starvation response 1 |